Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16l02
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.49 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   6.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   6.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   8.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   8.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.0  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 54  KSKNHTNHNQNRKAHRNGIKKPRKTRH 134
           +  NH NHN N+  H +        +H
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQH 446


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 304 YFLCVYLLIPNVHF 263
           + +CV +++ NVHF
Sbjct: 316 FSICVTVVVLNVHF 329


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 123 KTRHESTLGMDPKFL 167
           + RH STL +D K L
Sbjct: 239 ENRHSSTLDIDHKML 253


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 57  SKNHTNHNQNRKAHRN 104
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 57  SKNHTNHNQNRKAHRN 104
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 298 LCVYLLIPNVHF 263
           +CV +++ NVHF
Sbjct: 322 ICVTVVVLNVHF 333


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 298 LCVYLLIPNVHF 263
           +CV +++ NVHF
Sbjct: 322 ICVTVVVLNVHF 333


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 87  RKAHRNGIKKPRK 125
           ++AHR GI  P+K
Sbjct: 446 QRAHRLGIDTPKK 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,293
Number of Sequences: 438
Number of extensions: 1714
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)