Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16k17
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 32 0.076
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 31 0.13
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 5.0
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 5.0
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 6.6
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 26 6.6
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 25 8.7
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 8.7
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 8.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 8.7
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 32.3 bits (70), Expect = 0.076
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 1 RRVQIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMD 174
R QI +RGN + +PPPPL Y P AT NA NNA TT N +
Sbjct: 45 RNWQIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPE 101
Query: 175 TSRSNSTNSVAIAPYNKSKEPTLD 246
++ ++ +A +N + P +D
Sbjct: 102 EYANDYSSELAYI-HNVNDMPHVD 124
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +1
Query: 184 SNSTNSVAIAPYNKSKEPTLDAGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLM 345
+N + I K+ + AGE++ Y N+C+ F+ + R ++C D +E L+
Sbjct: 476 NNDDPQIQIEILRSLKDTFIKAGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLL 534
Query: 346 IHFINT 363
F+NT
Sbjct: 535 WEFVNT 540
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 565 FYNGGADMLGKDALAEAAKQLSLA 636
FY ++ GK LAEAAKQ+ ++
Sbjct: 49 FYIPSFNLFGKGCLAEAAKQIKMS 72
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 64 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 207
PP+ P+ + TN+ ++A G+ PP K++ RS+S N A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 1 RRVQIKSMTDERGNFYY-NTPPPPLRYPS 84
+R+Q+ T G++ + N PPP LR P+
Sbjct: 62 QRLQLYKKTISEGDYNFDNVPPPELRTPT 90
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 25.8 bits (54), Expect = 6.6
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +1
Query: 331 LSPLMIHFINTIR-DMCIDTNPINV-----NVVKRFESEETMIRHLIRLQKELGQGNAAE 492
L+ ++ +F+ + D ++TNP V NV K FE ET K L GN
Sbjct: 3 LTSVLWNFVAKLAVDHGLNTNPDQVFQTVENVGKSFEKYETSFL------KSLFNGNLGL 56
Query: 493 SLPSDSNIFQASFVL 537
SLPS NI VL
Sbjct: 57 SLPSAINILTLIIVL 71
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 435 HDTPPDSVAKRVGTRQRGRVPAERFEYI 518
+D+ PD++ +RV +QR P + F+ I
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCI 187
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 8.7
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Frame = +1
Query: 124 NNAPGYVPPTTRDNKMDTSRSNST--NSVAIAPYNKSKEPTLDAGESIWYNKCVDFVQKI 297
+N P PP N D S S +T N + +S + D SI N F K
Sbjct: 524 HNGPSTQPPEALPNGTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFTGKR 583
Query: 298 IRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNVVKRFE 423
+R + + +SP + I I +P N ++V+ E
Sbjct: 584 VRLGNVIESNVVSPDGTNRI-VIEPFERSVDPNNADIVEMVE 624
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 150 YDARQQNGHEPQQQHKLGSDRTVQQEQR 233
Y QQN E Q HK D+ QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Frame = +1
Query: 1 RRVQIKSMTDE---RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKM 171
R VQ++ +E +G F P + PS+ I ++ GY D K+
Sbjct: 79 REVQLRHRINEFRKKGYFTAEAPVELKKAPSSNNIPISYRDNLLSHVNGYARSMHNDRKV 138
Query: 172 DTSRSNSTNSVAIAPYNK 225
SRS + + +A + +
Sbjct: 139 RASRSRRISGMILAHFKR 156
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 34 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 129
RG Y N PP Y SN ++YNN
Sbjct: 953 RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,220
Number of Sequences: 5004
Number of extensions: 62434
Number of successful extensions: 246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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