Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16k06
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 91 1e-19
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 30 0.28
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 28 1.5
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 3.4
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 27 3.4
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 26 4.5
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.5
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 4.5
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 7.9
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 91.1 bits (216), Expect = 1e-19
Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 9/168 (5%)
Frame = +1
Query: 226 PFKTILKAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAE 405
PFKT A+H + TI+V K+ +++++ + LKK +K + K A+AE
Sbjct: 38 PFKT---AIHALETDANCTIFV-KKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAE 93
Query: 406 EENT-------EKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRL 564
E ++ L+ AK I+L+E P A + I ++T R R+ + GWVHR+
Sbjct: 94 AAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRM 153
Query: 565 RRQGKSLAFLTLRDGTGYLQCVLHGLLCQ--TYXALVLSTESSVVLYG 702
R Q K + F+ LRDGTG+LQCVL G + +Y + L ES+V LYG
Sbjct: 154 RTQ-KGIIFIILRDGTGFLQCVLSGKVYDRASYDFINLGPESTVCLYG 200
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 520 HRGQRICIRGWVHRLRRQGKSLAFLTLRDGT 612
H G+ I I GWV +R+ K++ F + DGT
Sbjct: 18 HNGELISINGWVRSIRKL-KNVCFAMVSDGT 47
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 145 VGNLSLSEIYTSXXXXXXXXXXXXXEKPFKTILKAMHHAGKEPFP 279
VGN+ LS I + FK L+ + GK+PFP
Sbjct: 113 VGNIELSRIVNADVRLDSSKFDIGIRPSFKNALEELTKKGKKPFP 157
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = -1
Query: 300 F*VNINCGKWLFASMMHCFQYCLEW---FLFRTITCIVIAILIRGI---YLGQAKVSN 145
F N N GK++ A ++H Y LE FL+ + + I G+ +LG A N
Sbjct: 608 FHYNYNIGKFVVAWLLHWAPYILETDRVFLYHYLPALYFGIAALGVSWSFLGNAVFGN 665
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 216 ERETIQDNIESNASCWQRAISHNL 287
E +TI DN+ SN WQ+ H +
Sbjct: 59 ELKTIDDNVHSNNLSWQKIQEHEV 82
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 604 DGTGYLQCVLHGLLCQTYXALVLSTES 684
D GYL+C+LHG + Y + +S
Sbjct: 295 DHLGYLECILHGDSAKRYNMSIEKVDS 321
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 616 YLQCVLHGLLCQTYXALVLSTESSV 690
YL C+L G+L + ALV +T +S+
Sbjct: 127 YLVCLLFGMLGSMWFALVKTTSNSI 151
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 448 KKILLQEDPSLPKATVVKICETTEHR 525
+KILL E P P A K+CET R
Sbjct: 101 RKILLTEPPMNPVANREKMCETMFER 126
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 7.9
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -1
Query: 570 APETMYPSSDAYPLTTVFSC 511
+P+ ++ + YPL T+F+C
Sbjct: 169 SPKPLFSALQVYPLATIFNC 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,579
Number of Sequences: 5004
Number of extensions: 55184
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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