Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16k05
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    28   1.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.5  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   4.6  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   6.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   8.0  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   8.0  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   8.0  

>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
 Frame = -2

Query: 345 LFFVSSETGFIFHENIDG--TAPFFRY*C*CLTPVYLL-MFS*SDSTKCLRHNLELFVGV 175
           L+F+ +  G I+ E IDG     + R  C C     L+ +     S     H  ++  G 
Sbjct: 89  LYFIDANRGQIYMEWIDGPCVRDYIREICECEIEKKLIPLMKRIGSEVAKMHKNDIVHGD 148

Query: 174 LFSRQM---AFNHSLPIFLSFG 118
           L +  M   + N+ +PIF+ FG
Sbjct: 149 LTTSNMMLESHNNPVPIFIDFG 170


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 162 DAKKVLPQKVRGYVVNTLWNLTKKTLVNTQVSNININ 272
           DAKK L   +RG+  +      +KT++N + SN  IN
Sbjct: 753 DAKKFLNLSLRGFEKHNFSTSLEKTVINFENSNGIIN 789


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 595 LLIKLRRNTIDFELSKIFGVSKTEVSNFVVTWINFVS 705
           +++ +    + F +S +   SK +  NFV   +NFVS
Sbjct: 549 IILPIFGRPVPFHISTLKNASKNDEGNFVYLRLNFVS 585


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 116 IDVLQFLSILAQNNASL 66
           + +LQFLSIL QNN  +
Sbjct: 275 VKILQFLSILGQNNPKI 291


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 179 EYFFRVKWPLTTVFQFSCPSGIDVLQFLSILAQ 81
           E+F RV     T   F CP GI   + + +LA+
Sbjct: 293 EFFLRVYRDDRTSVSFICPIGIQTHEVIKLLAR 325


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 269 NVNV*HLCIY*CFLSQIPQS-VYDITSNFLWEYFFRVKWPLTTVFQFSCPS--GIDVLQF 99
           ++NV   C Y   + Q+P S         LW     + W L T+F F+  S   + +L+F
Sbjct: 71  DINVVFTCGY--IIGQLPGSYALQRVPARLWFSVMNILWGLMTIFSFAVHSVRALMILRF 128

Query: 98  LSILAQ 81
              +A+
Sbjct: 129 FMAVAE 134


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 218 PQSVYDITSNFLWEYFFRV 162
           P+S YD+TS  +WE  FR+
Sbjct: 25  PKSNYDLTSWRIWEQAFRL 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,310
Number of Sequences: 5004
Number of extensions: 59396
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)