Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16k05
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0104 + 18021671-18021909,18022102-18022282,18022473-180225...    31   0.89 
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167...    31   0.89 

>05_04_0104 +
           18021671-18021909,18022102-18022282,18022473-18022568,
           18022632-18022672,18022761-18022833,18023036-18023749
          Length = 447

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 221 IPQSVYDITSNFLWEYFFRVKW-PLTTVFQFSCPSGIDVLQFLSILAQNNASLCL 60
           IP  V+ +  N + +   R+KW PL  +    CP GI+   +  +++  NA L +
Sbjct: 271 IPDYVFAVIDNSVSQMVGRLKWLPLLVLCSKLCPPGIEGTFYALLMSIQNAGLLM 325


>04_04_0396 +
           24915880-24916222,24916318-24916577,24916689-24916784,
           24916889-24917059,24917262-24917975
          Length = 527

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 221 IPQSVYDITSNFLWEYFFRVKW-PLTTVFQFSCPSGIDVLQFLSILAQNNASLCL 60
           IP  V+ +  N + +   R+KW PL  +    CP GI+   +  +++  NA L +
Sbjct: 351 IPDYVFAVIDNSVSQMVGRLKWLPLLVLCSKLCPPGIEGTFYALLMSIQNAGLLM 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,779
Number of Sequences: 37544
Number of extensions: 309407
Number of successful extensions: 658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)