Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16k05
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    28   7.5  
Z27079-11|CAC42341.1|  115|Caenorhabditis elegans Hypothetical p...    27   9.9  
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 46  IRNYF-KHNDALFCANMLRNWSTSIPEGQENWKTVVKGHL 162
           I  YF K +++ FC + L+N + SI E ++N+K  +   L
Sbjct: 5   IFQYFRKRSNSKFCGSFLQNVTESIRENEQNYKKTINNKL 44


>Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical
           protein ZK1251.8 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 319 FHIP*KYRWYSTFLQILMLMFDTCVFT 239
           FHIP KY+W ST    + L+    V+T
Sbjct: 5   FHIPEKYQWASTLFVHVALIAGVAVYT 31


>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 547 RWSRVVGISIEDQFLMLLIKLRRNTIDFELSKIFGVSKTEVSNFVVTWI 693
           R+ +V  I+     L LL +L+    D  L+K +G+S  + + F+V W+
Sbjct: 583 RYQQVRNITFPKSELRLLKELKICEND-NLNKFYGISFNQQNEFIVMWV 630


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 200 ITSNFLWEYFFRVKWPLTTVFQFSCP 123
           ++++ + +Y   + WPL+ +F  SCP
Sbjct: 101 MSTDVIVDYLGNIHWPLSAIFTSSCP 126


>Z27079-11|CAC42341.1|  115|Caenorhabditis elegans Hypothetical
           protein T05G5.11 protein.
          Length = 115

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 296 SIFSWNMKPVSEETKNKEQKLQTRNLKKQLFSLPNTSQYCEDIVPQ-SYYLQTMRQCNTT 472
           +IFSWN+K +    + K  +L ++     LFSL     Y   ++P  ++++ + R C   
Sbjct: 13  AIFSWNLKLLCSIRRTKVSELISKTSFSFLFSL-----YLTILLPMFAFFIMSSRSCIQF 67

Query: 473 P 475
           P
Sbjct: 68  P 68


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 107 LQFLSILAQNNASLCLK*FLIKNSNTNIECYGN 9
           L  L+ + QN+A  C K    +  N  +EC+GN
Sbjct: 438 LDILTQITQNSADACEKLAECEEMNVLLECFGN 470


>AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical
           protein Y39G8B.3 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 226 LRKH**IHRCQTLTLISEERCCTIYIFMEYE 318
           L+ H  I     L +IS ERCC  Y   +YE
Sbjct: 139 LKLHFAISASNILFVISIERCCACYFLNDYE 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,731,542
Number of Sequences: 27780
Number of extensions: 327576
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)