Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16k01
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    28   1.8  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    26   7.1  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   9.4  

>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = -1

Query: 626 LQTHNDSHYIITHRRYTYVHGNTFTILSLGLLDT*RSQSTLTRK*TSLSISRTTLFITDS 447
           L   N +H     R     H NTFT L   L+D        T K     +  T +F+TD 
Sbjct: 59  LSVVNANHENRPFRDLEGYHFNTFTFLKT-LMD-----KGYTEKEAEGLLEVTNMFVTDM 112

Query: 446 FQILHIKFVSGSFFILISYL 387
            +  H+ ++S + F   SYL
Sbjct: 113 LRHSHLNYLSEADFENCSYL 132


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 145 FPWIHLQGRLGEIWPSNQRKSLSVKAAH 228
           FPW  L      +WPS   + L +K AH
Sbjct: 310 FPWTRLDPYYNGVWPSIDERPL-LKTAH 336


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 250 YTSEVSTNVLLSQRGISSDLMAKFHLNVPVNV 155
           Y SEV+ N+L++   +    + +  LN P N+
Sbjct: 234 YCSEVTGNLLINVMHVDEQYVKRLKLNQPYNI 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,913
Number of Sequences: 5004
Number of extensions: 74480
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)