Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16k01
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938           30   2.4  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    28   7.4  

>05_02_0007 - 5547004-5547275,5547375-5547403,5550481-5550938
          Length = 252

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 294 GITATPYCSTAYKHRIRQRCLPMCCFHREGF 202
           G  ATPY +T+++    QR + +   HR+GF
Sbjct: 151 GFGATPYNATSFRRTEDQRTITVTNLHRQGF 181


>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
            25541673-25541751,25542151-25542238,25542330-25542600,
            25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 238  VSTNVLLSQRGISSDLMAKFHLNVPVNVSRGTQILKN*HNL 116
            V+ N L + R  SSDL      N  V VS+G Q+++N  N+
Sbjct: 1768 VTGNQLRNSRQSSSDLRKPSTCNEYVRVSKGNQLVRNPKNV 1808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,290,614
Number of Sequences: 37544
Number of extensions: 455267
Number of successful extensions: 935
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)