Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16j12
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   310   1e-85
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   1.4  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    27   3.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   10.0 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   10.0 

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  310 bits (761), Expect = 1e-85
 Identities = 152/212 (71%), Positives = 174/212 (82%)
 Frame = +3

Query: 39  AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 218
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 219 EKGRRIRELTSVVQKRFNIPEQSVELYAERVATRGLCAIAQAESLRYKLIGGLAVRRACY 398
           EKGRRIRELT++VQKRF   E +VELYAE+V  RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 399 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 578
           GVLR++ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++++ATRHVLLRQG
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182

Query: 579 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTE 674
           VLG+KVKIMLP   + K   KK  PD ++V +
Sbjct: 183 VLGVKVKIMLP---EPKTRQKKSLPDIVVVLD 211


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 405  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 560
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 189 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAERVATRGLCAI-AQAESLRYKL 365
           MATR Q       RR  E  + +QK +N  + ++EL  ERV   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 366 IG 371
           +G
Sbjct: 784 LG 785


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 367 ISLYLRDSAWAIAQRPRVATLSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 209
           + L L+    A+     ++ L    S+     +N F  T  SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 470  STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 559
            + C   + CR W   P W+ +  + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 468 GQRAKSMKFVDGLMIHSGDPCNDYVN 545
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 293 FYRLLWNVESLLYYGSQL 240
           FYRL W  + +LY  SQ+
Sbjct: 643 FYRLCWKDKGILYQDSQI 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,581
Number of Sequences: 5004
Number of extensions: 63131
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)