Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16j11
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 25/95 (26%), Positives = 37/95 (38%)
 Frame = +3

Query: 288 VHGLLQSADSWLDAGPGSGLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFS 467
           +HGL  SA +    GPG+  A  L      V    + G   S        +SD +  + S
Sbjct: 143 LHGLSSSAPTGSSCGPGAAAAAALLSKRRSV-SECSLGTASSTSSTASSRNSDRSAGSPS 201

Query: 468 ADEIGYFDLPAILDYVLNRSRADILNYVGFSQGAG 572
             E    D   ++ Y  N+S  D  + V  S  +G
Sbjct: 202 VSESDEVD---VIGYTSNQSDTDDHSSVQSSSDSG 233


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 317 RVSALQQTVHEQHWDLCTRAPLAARHAENGQHESVLRDY 201
           R    +Q VH Q +    R+P  + H+ +    +V+  Y
Sbjct: 66  RAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQY 104


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 283 CSCTVCCRALTRGW 324
           C C +C +A +R W
Sbjct: 43  CKCHLCGKAFSRPW 56


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 644 GDETDEYEINDVSKADS 694
           GD+ ++YE ND    D+
Sbjct: 110 GDDNNDYEDNDYGNQDN 126


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 641 SGDETDEYEINDVSKADSS 697
           SGDE+D  E+  V  + SS
Sbjct: 433 SGDESDVVELQPVKSSKSS 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,614
Number of Sequences: 438
Number of extensions: 3375
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)