Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16j09
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    42   6e-05
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    37   0.002
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    34   0.015
SPAC167.04 |pam17||presequence translocase-associated motor subu...    26   5.3  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    25   9.3  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   9.3  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   9.3  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    25   9.3  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
 Frame = +3

Query: 315 NPPVLLCHGLADSATSFRPLIKLMPEKFY--FIGIDLPGCGKSDRFPPGLMINIYDLVYA 488
           +PPVL+ HGL  S  ++R L K    K       ID    G S    P   ++   +   
Sbjct: 20  HPPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDSPCVAP---LSYSAMALD 76

Query: 489 VNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINFY 632
                K  + D  +++GHS+GA    +  L +P+K+ KL+ +D   +Y
Sbjct: 77  AFQFMKDHKLDKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNSPWY 124


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 531 LVGHSLGAIIGKLYNLVYPEKLTKLIEIDPI 623
           LVGHS+G  +  +Y + YPE++ KL+ + P+
Sbjct: 176 LVGHSMGGYLSAVYAMQYPERVEKLLLVSPV 206


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
 Frame = +3

Query: 336 HGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDRFPPGLMINIYDLV-------YAVN 494
           HGL    + F+ ++   P        D  GCG S +  P   I   D +           
Sbjct: 106 HGLGGQMSQFQKVMSYFPPTACLFSFDYWGCGLSRQAFPNQRIGSVDQLTTKGLSKLTYK 165

Query: 495 AVAKHFRWDA-FNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDP 620
            + K F  +  F L+GHS+GA I    + +   + T L+ ++P
Sbjct: 166 VLEKLFPENTQFILIGHSMGATIASRVSKMLQTRCTALLLLNP 208


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +2

Query: 275 LGPDVRGGLGRLLQSPGSALPWPSRLRDQLPPSNQIDAREVLFYRH 412
           +G    GGLG LL        W    + Q   + QI ARE  FYRH
Sbjct: 103 IGTIASGGLGWLLGPSIGRKIWTLLHKSQ---ARQIAAREQEFYRH 145


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 366 RPLIKLMPEKFYFIGIDLPGCGKSD 440
           R  IK    KF+F+GID P  G SD
Sbjct: 218 RKAIKFPEHKFHFVGID-PEGGVSD 241


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 450 PGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGK-LYNLV 581
           PG+++ + D+V   +  A    +D FN    + GAII K L N++
Sbjct: 210 PGMLLVLQDVVQVGDVDASKQVFDVFNTFLIASGAIISKALGNII 254


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 566 FTDDGAERMADQIKSVPTKMLRDRVHGVHQIVYVDHQARREPV 438
           FTD      AD    V  K+L+  +  V+ ++ V H  R   V
Sbjct: 115 FTDHSLFGFADAGSIVTNKLLKFTMSDVNHVICVSHTCRENTV 157


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 298 ATTHIRPQGTCMYHSFSNKLISKINF 221
           AT H+ PQ  C Y SF    +S+  F
Sbjct: 285 ATIHVTPQEHCSYASFETN-VSQFQF 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,541
Number of Sequences: 5004
Number of extensions: 50986
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)