Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16j09
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88315-14|AAB42366.2| 355|Caenorhabditis elegans Hypothetical p... 54 9e-08
U88315-13|AAN84844.1| 359|Caenorhabditis elegans Hypothetical p... 50 1e-06
U88315-12|AAB42367.1| 444|Caenorhabditis elegans Hypothetical p... 50 1e-06
U00052-2|AAK95881.1| 404|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z71181-5|CAA94898.1| 355|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z81038-8|CAB02763.1| 328|Caenorhabditis elegans Hypothetical pr... 31 0.70
U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical pr... 31 0.70
AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical ... 31 0.93
U39674-1|AAA80413.2| 137|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF077529-2|AAC26254.1| 292|Caenorhabditis elegans Hypothetical ... 30 1.2
Z81105-4|CAB03219.1| 299|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein. 28 6.5
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein. 28 6.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 27 8.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 27 8.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 27 8.6
>U88315-14|AAB42366.2| 355|Caenorhabditis elegans Hypothetical
protein C37H5.2 protein.
Length = 355
Score = 54.0 bits (124), Expect = 9e-08
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = +3
Query: 321 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDR--FPPGLMINIYDLVYAVN 494
P++L HG + IK + + IDLPG G+S R F +++ A+
Sbjct: 73 PIVLIHGFGAGVALWGSAIKRLAQFQNVYAIDLPGFGRSSRTKFSTDPETAEKEMIEAIE 132
Query: 495 AVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINF 629
+ NLVGHS G + Y L YP+++ LI DP F
Sbjct: 133 QWRVKMNLEKMNLVGHSFGGYLSTSYALKYPKRIENLILADPWGF 177
>U88315-13|AAN84844.1| 359|Caenorhabditis elegans Hypothetical
protein C37H5.3b protein.
Length = 359
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +3
Query: 321 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDR--FPPGLMINIYDLVYAVN 494
P++L HG + IK + + DLPG G+S R F +++ ++
Sbjct: 77 PIVLIHGFGAGVALWGSAIKRLAQFQTVHAFDLPGFGRSSRPKFSSDPETAETEMIDSIE 136
Query: 495 AVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINF 629
+ NLVGHS G + Y L YP+++ LI DP F
Sbjct: 137 QWRDKMNLEKMNLVGHSFGGYLATSYALKYPKRVENLILADPWGF 181
>U88315-12|AAB42367.1| 444|Caenorhabditis elegans Hypothetical
protein C37H5.3a protein.
Length = 444
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +3
Query: 321 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDR--FPPGLMINIYDLVYAVN 494
P++L HG + IK + + DLPG G+S R F +++ ++
Sbjct: 162 PIVLIHGFGAGVALWGSAIKRLAQFQTVHAFDLPGFGRSSRPKFSSDPETAETEMIDSIE 221
Query: 495 AVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINF 629
+ NLVGHS G + Y L YP+++ LI DP F
Sbjct: 222 QWRDKMNLEKMNLVGHSFGGYLATSYALKYPKRVENLILADPWGF 266
>U00052-2|AAK95881.1| 404|Caenorhabditis elegans Hypothetical
protein K02F3.6 protein.
Length = 404
Score = 41.9 bits (94), Expect = 4e-04
Identities = 31/116 (26%), Positives = 52/116 (44%)
Frame = +3
Query: 261 YIQVPWGRMCVVAWGDCCNPPVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSD 440
YI++ R+ V G P +L HG + S+R +K +K+ + ID G SD
Sbjct: 121 YIKLKKVRLHYVQTGSDDKPLMLFIHGYPEFWYSWRFQLKEFADKYRCVAIDQRGYNLSD 180
Query: 441 RFPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLI 608
+ +I +L + V + +D +V H G ++ + YPE + KLI
Sbjct: 181 KPKHVDNYSIDELTGDIRDVIEGLGYDKAIVVAHDWGGLVAWQFAEQYPEMVDKLI 236
>Z71181-5|CAA94898.1| 355|Caenorhabditis elegans Hypothetical
protein K07C5.5 protein.
Length = 355
Score = 31.9 bits (69), Expect = 0.40
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Frame = +3
Query: 252 KEW---YIQVPWGRMCVVAWGDCCNPPVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLP 422
K W ++Q+ RM V G +L+ HG + S+R ++ I ID+
Sbjct: 52 KNWNHKFVQLKNIRMHYVEEGPADGDVLLMVHGFPEFWYSWRFQLEHFKHTHRCIAIDMR 111
Query: 423 GCGKSDRFPPGLM-INIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLT 599
G +DR P G+ N+ LV + + L H GAI+ +++ +
Sbjct: 112 GYNTTDR-PSGISDYNLTHLVEDIRQFIEILELKRVTLAAHDWGAIVCWRVAMLHSNLID 170
Query: 600 KLI 608
+L+
Sbjct: 171 RLV 173
>Z81038-8|CAB02763.1| 328|Caenorhabditis elegans Hypothetical
protein C25A1.12 protein.
Length = 328
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 423 GCGKSDR--FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKL 596
G G+S R F I ++V + K + ++GH+ G + Y L P ++
Sbjct: 150 GFGRSSRSRFSDDNAIAELEMVEVMEDWRKAMGIEKMYIIGHAFGGYLASAYALENPSRV 209
Query: 597 TKLIEIDPINF 629
LI +DP F
Sbjct: 210 AHLILVDPWGF 220
>U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical
protein W01A11.1 protein.
Length = 452
Score = 31.1 bits (67), Expect = 0.70
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Frame = +3
Query: 321 PVLLCHGLADSATSFRPLIKLM--PEK--------FYFIGIDLPGCGKSDRFPPGLMINI 470
P+L+ HG + F I L+ P+K F I +PG G SD+ P +
Sbjct: 144 PILVAHGWPGNVFEFYKFIPLLTDPKKHGIDSDFAFEVIAPSIPGYGWSDQ-PKKTGFSQ 202
Query: 471 YDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKL 605
+ ++ F L G GAII L VYP+ + L
Sbjct: 203 LACARVFRKLMLRLGYNKFYLQGGDWGAIITSLLTKVYPQNVMAL 247
>AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical
protein Y73C8B.3 protein.
Length = 308
Score = 30.7 bits (66), Expect = 0.93
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 324 VLLCHGLADSATSFRPL-IKLMPEKFYFIGIDLPGCGKSDRFPPGLMINIYDLVYAVNAV 500
V+ HG S F+ + KL K FIG++ PG ++ +P INI Y+ NA+
Sbjct: 40 VVAFHGSPGSHNDFKYIRSKLDDLKIRFIGVNYPGFTFTNEYPDQKHINIERQNYS-NAL 98
Query: 501 AKHFRWDA-FNLVGHSLG 551
D +GHS G
Sbjct: 99 LDELGIDGKMAYIGHSRG 116
>U39674-1|AAA80413.2| 137|Caenorhabditis elegans Hypothetical
protein C06E2.5 protein.
Length = 137
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +2
Query: 203 KFVKFLKIYFR--NEFIRKRMVHTGSLGPDVRGGLGRLLQSPGSAL-----PWPSRLRDQ 361
KF L+ Y R NEFIR+ VH + G ++Q P +A+ P R R
Sbjct: 42 KFAITLQSYIRRRNEFIRRMRVH--EMREQAEAGPSEIVQQPSNAVGATEEPAAKRARTD 99
Query: 362 LPPSNQIDAREV 397
P N+ + EV
Sbjct: 100 TPEPNKENTTEV 111
>AF077529-2|AAC26254.1| 292|Caenorhabditis elegans Hypothetical
protein C09E8.2a protein.
Length = 292
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Frame = +3
Query: 321 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGC--GKSDRFPPGLM---INIYDLVY 485
PV++ HG+ + A+ F + + K Y ++ G G S R P GL+ N +
Sbjct: 65 PVIIVHGITNKASRFGGTVAYLKSKGY-KNSEIYGTTWGDSGRTPVGLVDMKCNYVKQIR 123
Query: 486 AVNAVAKHFRWDAFNLVGHSLGAIIGK 566
A+ + + +++G+S+G+ + +
Sbjct: 124 AMIIAVRQYTGQKVDVIGYSMGSPLAR 150
>Z81105-4|CAB03219.1| 299|Caenorhabditis elegans Hypothetical
protein R05D7.4 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.1
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Frame = +3
Query: 315 NPPVLLCHGLADSATSFRPLIKLMPEKFY--FIGIDLPGCGKSDRFPPGLMINIY-DLVY 485
N P+++ HGL ++ + K + +K +D+ G S + DLV
Sbjct: 45 NSPLVIVHGLFGQKQNWNSVGKALHKKLEAPVYAVDVRNHGSSPHTETMSYTEMAEDLVL 104
Query: 486 AVNAVAKHFRWDAFNLVGHSLGA-IIGKL-YNLVYPEKLTKLIEID 617
++ V + + NL+GHS+G I+ +L + + +++ KLI D
Sbjct: 105 FIDKVKEETKKTRVNLLGHSMGGKIVMRLAIDSKWSDRIEKLIVED 150
>Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical
protein F54B11.3b protein.
Length = 879
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 444 FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLV 581
F G+ Y+ +YA A +F D + + + A+ GK+YN V
Sbjct: 715 FGTGITNIFYNFIYAPIAGVFNFAGDNYMYFFNEVAAVFGKVYNSV 760
>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
protein F54B11.3a protein.
Length = 1111
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 444 FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLV 581
F G+ Y+ +YA A +F D + + + A+ GK+YN V
Sbjct: 715 FGTGITNIFYNFIYAPIAGVFNFAGDNYMYFFNEVAAVFGKVYNSV 760
>AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein.
Length = 879
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 444 FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLV 581
F G+ Y+ +YA A +F D + + + A+ GK+YN V
Sbjct: 715 FGTGITNIFYNFIYAPIAGVFNFAGDNYMYFFNEVAAVFGKVYNSV 760
>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
Length = 1111
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 444 FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLV 581
F G+ Y+ +YA A +F D + + + A+ GK+YN V
Sbjct: 715 FGTGITNIFYNFIYAPIAGVFNFAGDNYMYFFNEVAAVFGKVYNSV 760
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +2
Query: 230 FRNEFIRKRMVHTGSLGPD--VRGGLGRLLQSPGSALPWPSRLRDQLPPSNQIDAREVLF 403
F +E +R+R V P + GR P S+L + S+ P + D+ E L
Sbjct: 178 FVDEEMRERSVKLIEAAPSSYIAPDRGRSPARPHSSLGFDSQDNRFRTPEPRDDSPEQLL 237
Query: 404 YRHRPPGLRQVGPVPAGPDD 463
+ RP +RQ G P P +
Sbjct: 238 GQRRPIVMRQKGAPPPPPPE 257
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 357 SRSLLGHGRAEPGDCSNRPKPPRTSGPKEP 268
S L G G P + P PPRT P P
Sbjct: 246 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 357 SRSLLGHGRAEPGDCSNRPKPPRTSGPKEP 268
S L G G P + P PPRT P P
Sbjct: 267 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 357 SRSLLGHGRAEPGDCSNRPKPPRTSGPKEP 268
S L G G P + P PPRT P P
Sbjct: 252 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,790
Number of Sequences: 27780
Number of extensions: 311745
Number of successful extensions: 836
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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