Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16i23
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    87   2e-18
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   3.3  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   7.7  

>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
 Frame = +3

Query: 210 SDELAITNCALIHQDDFPSDIKHIEVSTGPSQHFVFSIRFYNGVDRGTVGFSAPQRKWAT 389
           S E A+TNC ++     P D K   +    S+  VFS +   G  +G +G S P R+WA+
Sbjct: 68  STEDALTNCIIVS----PMDFKQQYIIVDNSR--VFSTKPVPGFPQGCLGASQPHREWAS 121

Query: 390 LSIGQTI---DVKPFKPSSAECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLIQFANQV 560
            S+ Q +   D  P+ P  A  L S+TLE DF  +  T+ +P+D E+MA+ F   + +QV
Sbjct: 122 WSLNQQVHVADYDPYGPHGAPYLHSMTLEVDFQNRNRTTNEPFDGEEMAKLFCSSYQSQV 181

Query: 561 FTVGQQLAFLFQEKKVLSLIVKNLEAVDV 647
           F+ GQ++ F F+   +    V+ +  VD+
Sbjct: 182 FSPGQKIVFDFRSYNI-KATVRTISCVDL 209


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 630 NFLRSTTRLSSLGTRKPAVVRQ*KLDW 550
           N LRS  + S +G RKPA +R+   D+
Sbjct: 688 NTLRSARKASPIGDRKPAFMRRANTDF 714


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +2

Query: 515 GTNGQRFPYSVR-QSSFY---CRTTAGFLVPREESLVVDRKKFGSRRCASFSGRSQR 673
           GT  +  P+     SSFY    ++  G L   +  L+V    FG+  CA  SG S +
Sbjct: 216 GTPDENLPFLCSVDSSFYNSVFQSMKGNLNTAQGELIVAGHSFGAATCAFISGSSTK 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,649
Number of Sequences: 5004
Number of extensions: 56529
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)