Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16i23
         (680 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030613-1|AAH30613.1|  744|Homo sapiens N-ethylmaleimide-sensit...   149   7e-36
AF102846-1|AAF04745.2|  744|Homo sapiens N-ethylmaleimide-sensit...   147   3e-35
U03985-1|AAA17411.1|  751|Homo sapiens protein ( Human N-ethylma...   146   6e-35
AF135168-1|AAF70545.1|  744|Homo sapiens N-ethylmaleimide-sensit...   146   6e-35

>BC030613-1|AAH30613.1|  744|Homo sapiens N-ethylmaleimide-sensitive
           factor protein.
          Length = 744

 Score =  149 bits (362), Expect = 7e-36
 Identities = 69/152 (45%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
 Frame = +3

Query: 204 CPSDELAITNCALIHQDDFPSDIKHIEVSTGPSQHFVFSIRFYNGVDRGTVGFSAPQRKW 383
           CP+DEL++TNCA++++ DF S  +H+ V T P+  + F+++ +  V  G++ FS PQRKW
Sbjct: 11  CPTDELSLTNCAVVNEKDFQSG-QHVIVRTSPNHRYTFTLKTHPSVVPGSIAFSLPQRKW 69

Query: 384 ATLSIGQTIDVKPFKPSSA-ECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLIQFANQV 560
           A LSIGQ I+V  +    A +C+ ++T+E DF+ KK+  ++PYD+++MA +F+ QF NQ 
Sbjct: 70  AGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSIDSNPYDTDKMAAEFIQQFNNQA 129

Query: 561 FTVGQQLAFLFQEKKVLSLIVKNLEAVDVQAL 656
           F+VGQQL F F E K+  L+VK++EA+D   L
Sbjct: 130 FSVGQQLVFSFNE-KLFGLLVKDIEAMDPSIL 160


>AF102846-1|AAF04745.2|  744|Homo sapiens N-ethylmaleimide-sensitive
           factor protein.
          Length = 744

 Score =  147 bits (357), Expect = 3e-35
 Identities = 67/152 (44%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
 Frame = +3

Query: 204 CPSDELAITNCALIHQDDFPSDIKHIEVSTGPSQHFVFSIRFYNGVDRGTVGFSAPQRKW 383
           CP+DEL++TNCA++++ DF S  +H+ V T P+  + F+++ +  V  G++ FS PQRKW
Sbjct: 11  CPTDELSLTNCAVVNEKDFQSG-QHVIVRTSPNHRYTFTLKTHPSVVPGSIAFSLPQRKW 69

Query: 384 ATLSIGQTIDVKPFKPSSA-ECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLIQFANQV 560
           A LSIGQ I+V  +    A +C+ ++T+E DF+ KK+  ++PYD+++MA +F+ QF NQ 
Sbjct: 70  AGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSNDSNPYDTDKMAAEFIQQFNNQA 129

Query: 561 FTVGQQLAFLFQEKKVLSLIVKNLEAVDVQAL 656
           ++VGQQL F F E K+  L+VK++E++D   L
Sbjct: 130 YSVGQQLVFSFNE-KLFGLLVKDIESMDPSIL 160


>U03985-1|AAA17411.1|  751|Homo sapiens protein ( Human
           N-ethylmaleimide-sensitive factor mRNA, partial cds. ).
          Length = 751

 Score =  146 bits (354), Expect = 6e-35
 Identities = 66/152 (43%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
 Frame = +3

Query: 204 CPSDELAITNCALIHQDDFPSDIKHIEVSTGPSQHFVFSIRFYNGVDRGTVGFSAPQRKW 383
           CP+DEL++TNC+++++ DF S  +H+ V T P+  + F+++ +  V  G++ FS PQRKW
Sbjct: 18  CPTDELSLTNCSVVNEKDFQSG-QHVIVRTSPNHRYTFTLKTHPSVVPGSIAFSLPQRKW 76

Query: 384 ATLSIGQTIDVKPFKPSSA-ECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLIQFANQV 560
           A LSIGQ I+V  +    A +C+ ++T+E DF+ KK+  ++PYD+++MA +F+ QF NQ 
Sbjct: 77  AGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSNDSNPYDTDKMAAEFIQQFNNQA 136

Query: 561 FTVGQQLAFLFQEKKVLSLIVKNLEAVDVQAL 656
           ++VGQQL F F E K+  L+VK++E++D   L
Sbjct: 137 YSVGQQLVFSFNE-KLFGLLVKDIESMDPSIL 167


>AF135168-1|AAF70545.1|  744|Homo sapiens N-ethylmaleimide-sensitive
           factor protein.
          Length = 744

 Score =  146 bits (354), Expect = 6e-35
 Identities = 66/152 (43%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
 Frame = +3

Query: 204 CPSDELAITNCALIHQDDFPSDIKHIEVSTGPSQHFVFSIRFYNGVDRGTVGFSAPQRKW 383
           CP+DEL++TNC+++++ DF S  +H+ V T P+  + F+++ +  V  G++ FS PQRKW
Sbjct: 11  CPTDELSLTNCSVVNEKDFQSG-QHVIVRTSPNHRYTFTLKTHPSVVPGSIAFSLPQRKW 69

Query: 384 ATLSIGQTIDVKPFKPSSA-ECLCSVTLEADFMMKKTTSTDPYDSEQMARDFLIQFANQV 560
           A LSIGQ I+V  +    A +C+ ++T+E DF+ KK+  ++PYD+++MA +F+ QF NQ 
Sbjct: 70  AGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSNDSNPYDTDKMAAEFIQQFNNQA 129

Query: 561 FTVGQQLAFLFQEKKVLSLIVKNLEAVDVQAL 656
           ++VGQQL F F E K+  L+VK++E++D   L
Sbjct: 130 YSVGQQLVFSFNE-KLFGLLVKDIESMDPSIL 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,230,832
Number of Sequences: 237096
Number of extensions: 1910816
Number of successful extensions: 3842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3834
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)