Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16i18
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53150-1|AAA96123.2|  302|Caenorhabditis elegans Serpentine rece...    26   9.5  
AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical...    26   9.5  

>U53150-1|AAA96123.2|  302|Caenorhabditis elegans Serpentine
           receptor, class sx protein32 protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 415 FFTISFYLEFSVLGRIYCLIPANGIRQCNEKKHTKSVHL*IEHKAVICDFFF*LRAHSY 239
           F  +S +L+   + +IYC +PA        K +T  + + I    VI  FF  L+  +Y
Sbjct: 139 FLMVSGFLQRDTVTQIYCAVPAAFAGTAFSKFNTSGIFINI--AIVIVYFFTFLQLRTY 195


>AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical
           protein Y46G5A.17 protein.
          Length = 779

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 237 FRNQHSPCNINTNYYSSLHFTQHP 166
           +  Q SP  IN+NYY      +HP
Sbjct: 242 YMRQRSPIMINSNYYGFDTLNEHP 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,102,573
Number of Sequences: 27780
Number of extensions: 179826
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)