Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16i15
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    29   0.57 
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    28   1.3  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   5.4  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   7.1  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    25   9.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   9.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   9.4  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    25   9.4  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   9.4  

>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 125 VQFFIFSVCVHIVTLFTYIIYYSDIFASIYLKTVETEYDYIIVGSG 262
           V+F I+  C+H++TL     + +DI  +   K V  E  Y  +G G
Sbjct: 63  VKFIIYPTCLHMLTLLKNPQFRNDISRADLSKQVNDEIYYEWLGKG 108


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 203 ASIYLKTVETEYDYIIVGSGTAGSVIAHRI 292
           AS+  +   T +  ++VG G+AG  +AH+I
Sbjct: 18  ASMLARFASTHHKVLVVGGGSAGISVAHQI 47


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 742 PIFLVDRNPNISQPGEV 692
           P+F+VD NPN  + GE+
Sbjct: 622 PLFIVDNNPNSERRGEL 638


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 224 VETEYDYIIVGSGTAGSV---IAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSV 394
           +   +  ++VG  T  S+   + + IA E   TY+   A  +     ++P+L P L   +
Sbjct: 320 LRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRS--NVPLLPPTLVDQI 377

Query: 395 YDWNYE 412
           Y W  E
Sbjct: 378 YLWELE 383


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 233 EYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDI 361
           EYD  ++G G  G V A R A     T  V + G+ G   L++
Sbjct: 45  EYDLCVIGGGPGGYVAAIRGAQLGLKTICVEKRGTLGGTCLNV 87


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 443 MVDHKCRLPQGKIVGGSSKLNNMV 514
           ++D +CRLP G       KLNN +
Sbjct: 510 LLDEECRLPSGNHQSFLQKLNNQL 533


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 221  TVETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGH 346
            T  TE       +GTAG+      ATE   T  V E  S G+
Sbjct: 1365 TTATEVQTTTGATGTAGTETQVTTATEVQPTTAVTETSSSGY 1406


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 236 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKG 343
           +DY+++G G+ G   A R A       ++  +G  G
Sbjct: 8   FDYLVIGGGSGGLASARRAAKHGAKVALIEASGRLG 43


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 WHSWLRNSTSHSHRD*LHIYSI 324
           WH WLR+  S++ +  +HI+ I
Sbjct: 22  WHFWLRSFMSNNRKFLVHIHLI 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,587
Number of Sequences: 5004
Number of extensions: 73812
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)