Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16i15
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 40 0.003
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 38 0.009
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 35 0.064
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 35 0.085
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 32 0.45
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 32 0.60
10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904... 32 0.60
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 32 0.60
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 29 4.2
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428... 29 5.6
12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91... 28 9.7
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 28 9.7
03_06_0546 - 34646946-34647289,34647542-34647608 28 9.7
03_05_0041 - 20169308-20169317,20169485-20170491 28 9.7
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 39.5 bits (88), Expect = 0.003
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +2
Query: 203 ASIYLKTVETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFL 382
AS + + YDYIIVG GTAG +A ++ + Y ++LE G +G +I L F
Sbjct: 39 ASSFSRIQHEAYDYIIVGGGTAGCPLAATLSQK--YKVLLLERGGSPYGNRNISHLENF- 95
Query: 383 HKSVYDWNYETSPQEN--ACWGMVDHKCRLPQGKIVGGSSKLNNMVHVRGNIS 535
H + D + SP + + G+++ + K++GG + +N + R + S
Sbjct: 96 HICLAD-DSPNSPSQGFISTDGVIN-----ARAKVLGGGTSVNAGFYSRADPS 142
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 37.9 bits (84), Expect = 0.009
Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Frame = +2
Query: 236 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSVYDWNYET 415
YDYI+VG GTAG +A ++ + Y ++LE G +G ++ + F H + + ++
Sbjct: 51 YDYIVVGGGTAGCPLAATLSLK--YKVLLLERGGSPYGNRNVSYMENF-HIGLSNMAPDS 107
Query: 416 SPQE-NACWGMVDHKCRLPQGKIVGGSSKLNNMVHVRGNISHYAVWFHRKYSNDYIKKQF 592
+ Q + G+++ + R ++GG + +N + R + + + D + + F
Sbjct: 108 ASQAFISTDGVINARAR-----VLGGGTCINAGFYSRASSNFIQ---EVGWDEDLVNESF 159
Query: 593 EFVEKHFLHLDDL-QYESKLADSVLNA 670
+VE + + +++ L D +L A
Sbjct: 160 PWVEDKIVQWPKIAPWQAALRDGLLQA 186
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 35.1 bits (77), Expect = 0.064
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 227 ETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAG 334
E YDYI+VG GTAG +A +A +VLE G
Sbjct: 52 EEAYDYIVVGGGTAGCPLAATLAGPGGGRVLVLERG 87
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 34.7 bits (76), Expect = 0.085
Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Frame = +2
Query: 236 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSVYDWNYET 415
Y+YI+VG GTAG +A ++ + ++LE G +G ++ S H + D +T
Sbjct: 57 YNYIVVGGGTAGCPLAATLSERSR--VLLLERGGLPYGNRNV---SSEYHFA--DALADT 109
Query: 416 SPQENACWGMVDHKCRLPQGKIVGGSSKLNNMVHVRGNISHY--AVWFHRKYSNDYIKKQ 589
SP+ A + + + +++GG S LN + R + + A W R +
Sbjct: 110 SPRSPAQRFVSEDGVVNARARVLGGGSCLNAGFYTRASSGYVRAAGWDPR-----LVNAS 164
Query: 590 FEFVEKHFLHLDDL-QYESKLADSVLNA 670
+ +VE+ + D+ +++ L + +L A
Sbjct: 165 YRWVERELVFRPDVPRWQCALREGLLQA 192
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 32.3 bits (70), Expect = 0.45
Identities = 27/98 (27%), Positives = 46/98 (46%)
Frame = +2
Query: 236 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSVYDWNYET 415
YDYIIVG GTAG +A ++ + ++LE G + I ++ F D +T
Sbjct: 49 YDYIIVGGGTAGCPLAATLS--QRFRVLLLERGGSPYDDERIGNMTRFA-----DTLSDT 101
Query: 416 SPQENACWGMVDHKCRLPQGKIVGGSSKLNNMVHVRGN 529
SP A + + + +++GG S +N + R +
Sbjct: 102 SPSSPAQRFVSEDGVINSRPRVLGGGSCINAGFYTRAS 139
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 31.9 bits (69), Expect = 0.60
Identities = 30/146 (20%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Frame = +2
Query: 230 TEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGHGLLDIPVLSPFLHKSVYDWNY 409
+ Y+YI++G GTAG +A ++ + ++LE G +P + + D
Sbjct: 52 SSYNYIVIGGGTAGCPLAATLSEHSR--VLLLERGG-------LPYANMSSEQHFTDALA 102
Query: 410 ETSPQENACWGMVDHKCRLPQGKIVGGSSKLNNMVHVRGNISHYAVWFHRKYSNDYIKKQ 589
+TSP A + + + +++GG S LN + R + + + +
Sbjct: 103 DTSPASPAQRFISEDGVVNARARVLGGGSCLNAGFYTRASNEYVRA---SGWDARLVNSS 159
Query: 590 FEFVEKHFLHLDDL-QYESKLADSVL 664
+ +VE+ + D+ +++ L D++L
Sbjct: 160 YRWVERSLVFRPDVPPWQAALRDALL 185
>10_08_0628 +
19389508-19389637,19389774-19389850,19390332-19390438,
19390545-19390626,19390702-19390814,19391023-19391086,
19391192-19391266,19391691-19391807,19392131-19392199,
19392319-19392411,19392733-19392835,19393040-19393164,
19393317-19393366,19393477-19393543,19393663-19393742,
19394038-19394166,19394274-19394340,19394429-19394512
Length = 543
Score = 31.9 bits (69), Expect = 0.60
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +2
Query: 236 YDYIIVGSGTAGSVIAHRIA-----TETNYTYIVLEAGSK-GHGLLDIPVLSP-FLHKSV 394
YD ++VG+G AG A R+ +T+ + VLE GS+ G +L V P L + +
Sbjct: 3 YDVVVVGAGPAGLAAAIRLKQLCRDADTDLSVCVLEKGSEVGAHVLSGNVFEPRALDELI 62
Query: 395 YDWNYETSP 421
W E +P
Sbjct: 63 PKWRQEDTP 71
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 236 YDYIIVGSGTAGSVIAHRIATETNYTYIVLEAG 334
YDYII+G GTAG +A ++ Y ++LE G
Sbjct: 43 YDYIIIGGGTAGCPLAATLS--ERYRVLLLERG 73
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 233 EYDYIIVGSGTAGSVIAHRIATETNYTYI----VLEAGSKGH 346
EYD I+VGSG G V A ++A + + V+ GS G+
Sbjct: 68 EYDAIVVGSGIGGMVAATQLAAKGARVLVLEKYVIPGGSSGY 109
>04_03_0832 +
20139299-20139520,20139822-20141114,20142697-20142822,
20143322-20143442,20144213-20144481
Length = 676
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 503 NNMVHVRGNISHYAVWFHRKYSNDYIKKQFEFVEKHFLHLDDLQYESKL 649
N +R I A WF R Y Y+ K F + + D+L Y+ +L
Sbjct: 510 NRSALLRQKIYMDATWFPRTYMKLYMHKDFNSLRAWLMVKDELVYQFEL 558
>12_01_0120 +
912312-912615,913145-913371,913507-913754,914293-914656,
914758-915154,915671-915693,916645-916987,917513-917532,
918418-918527,919484-920255
Length = 935
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 155 HIVTLFTYIIYYSDIFASIYL 217
++ TLF Y +++S ++ SIYL
Sbjct: 86 YVATLFPYFLHWSRVYGSIYL 106
>06_01_0497 +
3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 230 TEYDYIIVGSGTAGSVIAHRIATET 304
TE +++VG AG V+AH +A +T
Sbjct: 678 TETHWLVVGVAGAGRVLAHLVAAQT 702
>03_06_0546 - 34646946-34647289,34647542-34647608
Length = 136
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = -2
Query: 530 CCLGHVPCYLIWMIPQLFCLEGVCIYGQPCPSKHFP 423
CC V C L+ CL C G+ S H P
Sbjct: 48 CCAAGVMCVLLGFFAHCHCLYSCCYRGKMRDSFHLP 83
>03_05_0041 - 20169308-20169317,20169485-20170491
Length = 338
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 357 IFLFLVPFYINRFMIG-TMKHHHRKMLAGA 443
+FL +PF I R M G T+ H R +AGA
Sbjct: 191 LFLVSIPFLIKRIMDGETLFHDRRVWMAGA 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,691,009
Number of Sequences: 37544
Number of extensions: 431221
Number of successful extensions: 881
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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