Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16i15
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    64   1e-10
Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    28   8.8  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
 Frame = +2

Query: 227 ETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKGH---GLLDIPVLSPF-LHKSV 394
           E +  +IIVG+G+AG V+A+R+  + +   +++EAG   H     + +P    + L    
Sbjct: 35  ENKPTHIIVGAGSAGCVLANRLTEDPSNRVLLIEAGPVDHKWDWRIHMPAALMYNLCSDT 94

Query: 395 YDWNYETSPQENACWGMVDHKCRLPQGKIVGGSSKLNNMVHVRGNISHYAVW 550
           Y+W+Y T+ Q+N    + +     P+G++ GGSS LN M +VRG+   Y  W
Sbjct: 95  YNWHYHTTAQKN----LGNRVFYWPRGRVWGGSSTLNAMCYVRGHAYDYNRW 142


>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 233 EYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKG 343
           E+DY+++G G+ G   A R A E   +  ++E+G  G
Sbjct: 6   EFDYLVIGGGSGGIASARR-AREFGVSVGLIESGRLG 41


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 233 EYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKG 343
           E+DY+++G G+ G   A R A E   +  ++E+G  G
Sbjct: 20  EFDYLVIGGGSGGIASARR-AREFGVSVGLIESGRLG 55


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 62  LYND*NVFKISTNIKMNFSYCVQFFIFSVCVHIVTLFTYIIYYSDIFASI 211
           LYN+ ++ +I  +I     Y   F+I SVC+  V L   + +Y+ I  SI
Sbjct: 21  LYNEPDIVRIIVSITELIFYFFAFYINSVCLK-VYLKIQLFHYNFIILSI 69


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 191 SDIFASIYLKTVETEYDYIIVGSGTAGSVIAHRIATETNYTYIVLEAGSKG 343
           SD+  SI   +        ++GSG AGS +A+ +        ++LE  S G
Sbjct: 13  SDLHTSIRNSSSTKHVFACVLGSGVAGSSVAYHLTKRNIKDVLLLERASDG 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,637,192
Number of Sequences: 27780
Number of extensions: 409253
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)