Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16i10
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   1.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   1.8  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    23   5.6  

>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = +3

Query: 63  TVSMLLISTDYGQCILLKRIL 125
           T+S+L ++T+YG+C+   +++
Sbjct: 346 TISLLDLATEYGECVSFLKLV 366


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 67  CQCCLYLRTTDNVFYLKEFYLNKI 138
           CQC LY  T   +  L+ F+L+K+
Sbjct: 78  CQCYLYHSTNSQLEPLEVFHLHKL 101


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 184 KIICNYNKSTNIIKI*FYLNKILLSKIHCP*SVDISSIDTVTSHV-GRRTRGCYARPSL 11
           K+ C     + ++ I + LN I            +  ID V +   G ++RGCY  P L
Sbjct: 235 KLECKDGTFSGVVSIFYQLNAIARRN-------GVGRIDIVENRFSGLKSRGCYETPGL 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,542
Number of Sequences: 5004
Number of extensions: 7080
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)