Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16i03
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    72   7e-14
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   3.6  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    26   4.8  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.8  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   8.4  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   8.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 71.7 bits (168), Expect = 7e-14
 Identities = 36/73 (49%), Positives = 51/73 (69%)
 Frame = +2

Query: 2   PRAMALRHAAQVVVGSGQMVLQTGKHPGLLKDEVCSPAGSTICGVTELENGRLRSTFINA 181
           P+A  L  AAQ +VG+G+MVLQ G+HP +++++V +PAG TI G+  LE+G++RST    
Sbjct: 213 PQAQEL--AAQTMVGTGRMVLQ-GQHPAMIRNDVSTPAGCTISGLLALEDGKIRSTIARG 269

Query: 182 IEAATNRTKDLGK 220
           IE AT     LGK
Sbjct: 270 IEQATKTASGLGK 282


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +2

Query: 65  QTGKHPGLLKDEVCSPAGSTICGVTELENGRLRSTFINAIEAATNRTK 208
           +TGK P  L      P  S    V+   NG L S  +      TN TK
Sbjct: 96  ETGKRPAYLLKPFQPPFHSANSDVSNNSNGALSSNMLKTHAHHTNSTK 143


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 535 QFTLVIRIKIATIKYYNSKKK 597
           QF L I   +AT+KYYN  KK
Sbjct: 355 QFELYIFGMLATVKYYNFLKK 375


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 83  GLLKDEVCSPAGSTICG 133
           G+L D V SP G T CG
Sbjct: 174 GMLYDPVVSPCGHTFCG 190


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 113 QENKLHLSIDQDVYRFARPSDRYPLPPVLRDAMP 12
           ++NK+  S+      F  P DR PL P+ R A+P
Sbjct: 295 RKNKIRDSLQSSPLNFP-PRDRPPLIPISRIAVP 327


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 413 LIHTYDLSIIVLNMYDVICYAPFTFFV*IIMFVRMLIAECY 291
           +I T D+       Y+V+ YAP+  F  I+M  +M + E Y
Sbjct: 364 IIETLDIVEENKKFYEVMEYAPYDMFS-IVMSGKMTMPEVY 403


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 180  AFMNVDLNLPFSNSVTPHIVEP 115
            A   +D+N P S  V  HI++P
Sbjct: 1765 AISEIDMNYPVSRKVVRHILKP 1786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,642
Number of Sequences: 5004
Number of extensions: 43456
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)