Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16i03
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.2  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 564 NFNSNY*SKLYTNLHS**YYEVRIV 490
           N+N+N   KLY N +   YY +  +
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 564 NFNSNY*SKLYTNLHS**YYEVRIV 490
           N+N+N   KLY N +   YY +  +
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNINYI 114


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 95  LSIDQDVYRFARPSDRYPLPPVLRDAMPL 9
           L ID DVY   + S  +   P ++D +PL
Sbjct: 58  LPIDVDVYNTEQQSTVFVAIPRIQDGVPL 86


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 564 NFNSNY*SKLYTNLHS**YYEVRIV 490
           N+N+N   KLY N +   YY +  +
Sbjct: 90  NYNNNNYKKLYCNNYRKLYYNINYI 114


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 564 NFNSNY*SKLYTNLH 520
           N N+NY  KLY N++
Sbjct: 97  NNNNNYNKKLYYNIN 111


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 83  QDVYRFARPSDRYPLPP 33
           QD+    R + RYPL P
Sbjct: 111 QDIETIIRRNSRYPLRP 127


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 564 NFNSNY*SKLYTNLH 520
           N N+NY  KLY N++
Sbjct: 335 NNNNNYNKKLYYNIN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,737
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)