Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16h17
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   4.7  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   6.2  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    26   6.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   8.2  

>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/80 (21%), Positives = 32/80 (40%)
 Frame = +1

Query: 472 LIAIRCRTLVPNATRSYFCLQQQRFPSKGVTHVHLSTLEQHHEKSAGVCSSAGQQMDGVT 651
           L ++  RT++      Y       F    + + H++     H K+  + SS+   +  V 
Sbjct: 84  LESLHIRTIISLRQEEYSEEDLHYFTKHHINYYHIAMPGSKHRKNDCISSSSNPDISDVD 143

Query: 652 NRIIGALQVLSKL*QWRRLL 711
           + +   LQ+L     W  LL
Sbjct: 144 DLVRKTLQLLLNKENWPVLL 163


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 320 CNYHRRDRAVCRKSMTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 293 ARILDLGVCCNYHRRDRAVCRKSMTPTPQDVS 388
           A +L+  +C NYH+R  AV    + P   D +
Sbjct: 214 AGLLEEDLCANYHKRLEAVSLDFLPPAYNDTA 245


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -3

Query: 352 THSTIATMIIATNS*IKNSSGHDSVDENDRACIFYIDVPSLFKS 221
           +HS+ +++ I  +S + N++ H SV ++ ++  F + VPS  +S
Sbjct: 474 SHSSASSLPITPSSYLSNTTLHSSV-QSSQSSQFTVSVPSSTQS 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,520
Number of Sequences: 5004
Number of extensions: 60393
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)