Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16h17
         (717 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ363529-1|ABC88012.1| 1099|Homo sapiens low-voltage-activated c...    31   3.1  
DQ363528-1|ABC88011.1| 1083|Homo sapiens low-voltage-activated c...    31   3.1  
DQ363527-1|ABC88010.1| 1088|Homo sapiens low-voltage-activated c...    31   3.1  
DQ363526-1|ABC88009.1| 1077|Homo sapiens low-voltage-activated c...    31   3.1  
AF223563-1|AAF60163.1| 1536|Homo sapiens low-voltage-activated c...    31   3.1  
AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated c...    31   3.1  

>DQ363529-1|ABC88012.1| 1099|Homo sapiens low-voltage-activated
           calcium channel alpha1H subunit splice variant 577
           protein.
          Length = 1099

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 658 SCSSRRPSADQHCYTHPPIFHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
           S  +R+ +  QHC +  P    A PG   A AS P+ E V+    + C W+   E
Sbjct: 812 SVRTRKHTFGQHCVSSRP----AAPGGEEAEASDPADEEVSHITSSACPWQPTAE 862


>DQ363528-1|ABC88011.1| 1083|Homo sapiens low-voltage-activated
           calcium channel alpha1H subunit splice variant 544
           protein.
          Length = 1083

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 658 SCSSRRPSADQHCYTHPPIFHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
           S  +R+ +  QHC +  P    A PG   A AS P+ E V+    + C W+   E
Sbjct: 796 SVRTRKHTFGQHCVSSRP----AAPGGEEAEASDPADEEVSHITSSACPWQPTAE 846


>DQ363527-1|ABC88010.1| 1088|Homo sapiens low-voltage-activated
           calcium channel alpha1H subunit splice variant 513
           protein.
          Length = 1088

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 658 SCSSRRPSADQHCYTHPPIFHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
           S  +R+ +  QHC +  P    A PG   A AS P+ E V+    + C W+   E
Sbjct: 801 SVRTRKHTFGQHCVSSRP----AAPGGEEAEASDPADEEVSHITSSACPWQPTAE 851


>DQ363526-1|ABC88009.1| 1077|Homo sapiens low-voltage-activated
           calcium channel alpha1H subunit splice variant 512
           protein.
          Length = 1077

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 658 SCSSRRPSADQHCYTHPPIFHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
           S  +R+ +  QHC +  P    A PG   A AS P+ E V+    + C W+   E
Sbjct: 790 SVRTRKHTFGQHCVSSRP----AAPGGEEAEASDPADEEVSHITSSACPWQPTAE 840


>AF223563-1|AAF60163.1| 1536|Homo sapiens low-voltage-activated
            calcium channel alpha13.2 subunit delta25B splice variant
            protein.
          Length = 1536

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 658  SCSSRRPSADQHCYTHPPIFHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
            S  +R+ +  QHC +  P    A PG   A AS P+ E V+    + C W+   E
Sbjct: 1249 SVRTRKHTFGQHCVSSRP----AAPGGEEAEASDPADEEVSHITSSACPWQPTAE 1299


>AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated
            calcium channel alpha 1H protein.
          Length = 2353

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 658  SCSSRRPSADQHCYTHPPIFHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
            S  +R+ +  QHC +  P    A PG   A AS P+ E V+    + C W+   E
Sbjct: 2066 SVRTRKHTFGQHCVSSRP----AAPGGEEAEASDPADEEVSHITSSACPWQPTAE 2116


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,641,014
Number of Sequences: 237096
Number of extensions: 2097817
Number of successful extensions: 4865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4864
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)