Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16h17
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    30   1.9  

>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 610 PPIFHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
           PP  ++ VP Y       P TE+    G ++  W SV+E
Sbjct: 27  PPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
            family protein 4 protein.
          Length = 960

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = +2

Query: 164  FLLTTSLLVDNIRIGIKPRAFEK*RDVDVENTGAIILIDAVMTARILDLGVCCNYHRRDR 343
            FL+T SLL  +I +G+         D+D  + G I++  A+  A    + +C  YHR + 
Sbjct: 812  FLMTFSLL--SISMGVCGGLALLGSDLDSVSMGCIVM--AIGLAVDYSVHICYRYHRSEY 867

Query: 344  AVCRKSMTPTPQDVSW 391
               ++ +  T   V W
Sbjct: 868  KTAQEKVADTLASVGW 883


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,871,144
Number of Sequences: 27780
Number of extensions: 356131
Number of successful extensions: 950
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)