Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16h15
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.25 
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    29   0.25 
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   0.77 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   1.0  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    27   1.0  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   1.8  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   4.1  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   4.1  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    24   5.4  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    24   5.4  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    23   9.4  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    23   9.4  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    23   9.4  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    23   9.4  
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    23   9.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    23   9.4  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    23   9.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    23   9.4  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.25
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 75   QKRNMNTSVDAVTKLIRLQ-NDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 251
            +K  M    D  T   RL+ +  +    +++ Y NSD  DYT+   ++PG  F    E +
Sbjct: 1124 EKDAMLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDYTVNDRSSPGSPFPIETETI 1183

Query: 252  T 254
            +
Sbjct: 1184 S 1184


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.25
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 99  VDAVTKLIRLQNDVLDMMREVDQYL 173
           +D  + +IRL ND++  +RE++QYL
Sbjct: 254 LDETSSVIRLSNDLVLFLREMNQYL 278


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 96  SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIES 206
           S+D   +L  L NDVL     V++ LNS  PD  +++
Sbjct: 391 SMDTTVRLWNLDNDVLHKDNPVEESLNS-PPDQPVDN 426


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 159 VDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIESNAMVFDETNKNLKFIHNSKK 332
           + ++LN++TP +++   N       F D  L KK  E         + NL+   N K+
Sbjct: 69  LQKHLNTETPSFSVSIENPSKPSAAFNDASLGKKSTEHQIDGIRNGSSNLQMEGNDKE 126


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = +3

Query: 51  VQLLQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTP 188
           + +L++SF + +++ SV A    + L+++VLD+ +   + +  D P
Sbjct: 567 ITILRWSFPRDDVHDSVQAQQIALGLRDEVLDLEKAGIKVIQCDEP 612


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 164  VHFAHHVQHVVLQTNELCHRVHGRVHVSFLKTKLQQLY 51
            V+  HHVQ  +   NE+      +V ++ ++ K+Q L+
Sbjct: 934  VYAHHHVQLRIGLDNEISQNNEAKVFLNIIRAKVQNLH 971


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1008

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 190  SGVSLFRYWSTSRIMSNTSFCKRMSFVTAST 98
            SGVS    +S +R +S  SF   +SF+TA +
Sbjct: 976  SGVSETPAFSHARDVSTASFSDAVSFITADS 1006


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 204 SLNA-PGKQFDFLDEMLTKKLIESNAMVFDETNKNLKFIHNSKK 332
           +LNA PG QF   +EM  K + E   +V +   K +K  +  K+
Sbjct: 370 ALNATPGSQFISAEEMNQKYISEQTQLVEEALTKVMKEKYREKE 413


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 116 LCHRVHGRVHVSFLKTKLQQLYVSTIQFGLI 24
           L H  HGR    +L+ +L+      +Q+GL+
Sbjct: 431 LIHANHGRGVTEYLREQLKHTEDEIVQYGLL 461


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 195 CNRACRCLDIGPLRASCP 142
           CN    C++   LRA+CP
Sbjct: 180 CNLCYECIESDELRANCP 197


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 114 KLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 251
           +L + QND+ + +  +    N   P   IESLN P  Q+ F D  L
Sbjct: 270 QLAKTQNDLGEFLDYIIS--NYKVP---IESLNQPSDQYSFHDAYL 310


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 54  QLLQFSFQKRNMNTSVDAVTKLIRLQNDVL 143
           Q    +FQ++++ TS+D+  K   +QN  L
Sbjct: 393 QPFSLTFQRKSLWTSLDSTIKEAGIQNTAL 422


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 255 KKLIESNAMVFDETNKNLKFIHNSKK 332
           KKL+E      ++  KNL F+  S++
Sbjct: 42  KKLLELERKALEDKEKNLNFVVESER 67


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 141 LDMMREVDQYLNSDTPDYTIESLNAP 218
           LD   + D+   SDT D    SLNAP
Sbjct: 75  LDSTTDEDEIPGSDTVDEEDPSLNAP 100


>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 30  AELYSGHVQLLQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESL 209
           A+  SG  QLL+     RN+        +  RL++  L+  RE+D+Y +    ++     
Sbjct: 3   AQTNSGIQQLLEAEKVARNIVEKARQ-HRTQRLKDARLEAKREIDEYASKKEEEFKKSES 61

Query: 210 NAPG 221
            A G
Sbjct: 62  QASG 65


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 162 DQYLNSDTPDYTIESLN 212
           ++YL S  P YT+E LN
Sbjct: 486 ERYLISSYPQYTMEDLN 502


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 100 TDVFMFLF*KLNCNNCTCPLYNS 32
           TDV +F+F ++N  +C   ++N+
Sbjct: 209 TDVELFMFGQVNSEHCRHKIFNA 231


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 237 KNQTVCPARLRILWCNRACRCLDIGPLRASCPT 139
           KN  V    LR  W NR  +  D+ P RAS  T
Sbjct: 444 KNPQVKTETLR--WLNRCLQLTDVCPPRASLET 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,277,395
Number of Sequences: 5004
Number of extensions: 23162
Number of successful extensions: 101
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)