Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16h12
         (666 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110432-1|AAI10433.1|  158|Homo sapiens Unknown (protein for IM...    57   7e-08
BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and pol...    53   8e-07
BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and pol...    53   8e-07
AF046935-1|AAC03107.1|  725|Homo sapiens PCF11p homolog protein.       53   8e-07
AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.     53   8e-07
U44425-1|AAD45962.1|  143|Homo sapiens protein serine kinase c17...    30   6.5  

>BC110432-1|AAI10433.1|  158|Homo sapiens Unknown (protein for
           IMAGE:5529131) protein.
          Length = 158

 Score = 56.8 bits (131), Expect = 7e-08
 Identities = 29/53 (54%), Positives = 34/53 (64%)
 Frame = +2

Query: 251 KEISEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEKVNFH 409
           ++   +Y SSL DLT NSKP INMLTILAEEN+  A  IV  +E    KV  H
Sbjct: 99  EDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKVFIH 151


>BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and
           polyadenylation factor subunit, homolog (S. cerevisiae)
           protein.
          Length = 1555

 Score = 53.2 bits (122), Expect = 8e-07
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +2

Query: 251 KEISEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEK 397
           ++   +Y SSL DLT NSKP INMLTILAEEN+  A  IV  +E    K
Sbjct: 16  EDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAK 64


>BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and
           polyadenylation factor subunit, homolog (S. cerevisiae)
           protein.
          Length = 1555

 Score = 53.2 bits (122), Expect = 8e-07
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +2

Query: 251 KEISEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEK 397
           ++   +Y SSL DLT NSKP INMLTILAEEN+  A  IV  +E    K
Sbjct: 16  EDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAK 64


>AF046935-1|AAC03107.1|  725|Homo sapiens PCF11p homolog protein.
          Length = 725

 Score = 53.2 bits (122), Expect = 8e-07
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +2

Query: 251 KEISEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEK 397
           ++   +Y SSL DLT NSKP INMLTILAEEN+  A  IV  +E    K
Sbjct: 16  EDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAK 64


>AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.
          Length = 1644

 Score = 53.2 bits (122), Expect = 8e-07
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = +2

Query: 251 KEISEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEK 397
           ++   +Y SSL DLT NSKP INMLTILAEEN+  A  IV  +E    K
Sbjct: 105 EDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAK 153


>U44425-1|AAD45962.1|  143|Homo sapiens protein serine kinase c17
           protein.
          Length = 143

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 427 LLKSYCPHVHYIRESGRC*GTPVVIRNGDTCLVSSNLVCNQLNTSR 564
           LL + C  +H+I  +  C G      +  T L+SSNL  + L+T R
Sbjct: 65  LLDNGCSKIHFISPNIYCCGAGTADTDMTTQLISSNLELHSLSTGR 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,509,827
Number of Sequences: 237096
Number of extensions: 2232753
Number of successful extensions: 5125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5117
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)