Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16h12
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   4.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.0  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 262 GDF-FRHDARPPTMACQTRTFSINCTSVVKYNTNCST 155
           GD  F     PPT      + S++C   VK+   C+T
Sbjct: 135 GDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCAT 171


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 567 MPARV*LVTNEV*RN*TGVTIPYHNWCASTPTTFSNIVNVWTITLQE 427
           +P+ + +++N++  N   +  PY NW  +     S I +V+ I + E
Sbjct: 87  VPSSLNVISNKI-GNGGPLLEPYPNWSWAKNQNCSGITSVYRIAIDE 132


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -1

Query: 567 MPARV*LVTNEV*RN*TGVTIPYHNWCASTPTTFSNIVNVWTITLQEC 424
           +P  +  VT EV  +   +  PY NW  +       + +V+ + + +C
Sbjct: 84  VPLTLGYVTREVSIDGNPLIAPYPNWSYNDVKYCDGLTSVYRMQVDKC 131


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 504 PYHNWCASTPTTFSNIVNVWTITLQEC 424
           PY NW   T      + +V+ I + EC
Sbjct: 230 PYPNWEWHTVGNCDGLTSVFRIQVDEC 256


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 533 FDETKQVSPFLITTGVPQHRPL 468
           F+ T+ +SP L+   V + RPL
Sbjct: 110 FERTEPLSPHLLNLEVERWRPL 131


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 415 LKMEIHLLQMLFHGFNDNPSVFDILFRKN 329
           L M   +L +LFH     P++F  L R+N
Sbjct: 314 LYMVTVILGLLFHALITLPTIFWFLTRQN 342


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 292 DRQQQAIDKYAHNSCGREYRTR 357
           D+ +Q+   Y    C R YRT+
Sbjct: 27  DKHEQSDTLYVCEFCNRRYRTK 48


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -1

Query: 504 PYHNWCASTPTTFSNIVNVWTITLQEC 424
           PY NW  +      +I+N+  + +  C
Sbjct: 94  PYPNWEMNDINKIDSIINIIRVRVDAC 120


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 408 WKFTFSKCFSTVSTITPA 355
           W+ T  KCF + + + P+
Sbjct: 371 WRLTCRKCFKSRTNLDPS 388


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 65  RVKQNYASDWCAICILR 115
           R+  +   DWCA+  LR
Sbjct: 389 RIGSSVEFDWCAVSCLR 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,412
Number of Sequences: 438
Number of extensions: 4270
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)