Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16h09
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    41   2e-04
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    26   6.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.4  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   6.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.4  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   6.4  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.4  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   8.4  

>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 37/69 (53%)
 Frame = +1

Query: 394 RRAACICVRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXXXXXTAMREVLEEAGVIGKLG 573
           R AA +   S  + +VLLV+S+++  +W+               A+RE  EE G++G + 
Sbjct: 42  RLAAGVVALSADKRKVLLVSSAKKHPSWVVPKGGWEADESVQQAALREGWEEGGLVGHIT 101

Query: 574 RCLGVFENR 600
           R LG F+++
Sbjct: 102 RSLGSFKDK 110


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 573 TMSWSIREPRTQTPNRGLCYDCDPRTTRVGG 665
           T   ++ E RT+    G+ Y CDPR     G
Sbjct: 38  TQDPALNEVRTEKLKNGVTYVCDPRPGHFSG 68


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = -2

Query: 540 YLPHRSDRRLLFRLYSPARHNPVVGPSRRRHQQDLCFGI*THANTCRPSPKTLVVIYPYR 361
           +LP  +   LL +   PA+ +P +GP+++  QQ     I +  +          V+ P +
Sbjct: 56  HLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQPHYAEAIVPIQQVLQPQQ 115

Query: 360 IRLLLYHFCLQTRKHERNERSQ 295
            R L  +    T   +++ + Q
Sbjct: 116 YRQLPPNMVAATNAPQQHPQLQ 137


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 224 HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 126
           HIR +L R Y FS       ++ S+++NN   I
Sbjct: 256 HIRVLLERDYKFSNDSYFTFYEGSSWHNNDAGI 288


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 602 SRFSNTPRHRPSFPITPASSSTSRIA 525
           +R ++TP +  S P  P+SSST  I+
Sbjct: 107 TRLTSTPSNSSSLPSIPSSSSTPSIS 132


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 587 TPRHRPSFPITPASSSTSR 531
           TPRH+P F ++ A SS ++
Sbjct: 618 TPRHKPKFDLSKALSSVAK 636


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 498 YSPARHNPVVGPSRRRHQQDL 436
           Y  A HNP V    RRH ++L
Sbjct: 87  YKAAMHNPKVSQKGRRHAKEL 107


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 647 NYPSGRIQDSWDVRGN 694
           NY S R++D WD++ N
Sbjct: 354 NYESSRVEDFWDIQLN 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,707
Number of Sequences: 5004
Number of extensions: 54792
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)