Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16h09
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0651 + 30644241-30644615,30644751-30644858                       50   3e-06
06_01_1033 - 8080179-8080685                                           47   1e-05
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617...    40   0.002
02_04_0020 - 18956282-18956461,18956591-18956740,18957934-189580...    37   0.014
06_01_0197 - 1525945-1526622                                           28   6.6  

>02_05_0651 + 30644241-30644615,30644751-30644858
          Length = 160

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
 Frame = +1

Query: 340 MVKEKPNSIRIYDDEGFRRRAACIC--VRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXX 513
           +V  +   ++ Y   G R    CI   VRS  E EVL++TS ++    +           
Sbjct: 4   LVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVITS-QKGHGMMFPKGGWELDES 62

Query: 514 XXXTAMREVLEEAGVIGKLGRCLGVFENREHKHRTE----VYVMTVTQELPEWEDSRLMG 681
               A RE LEEAGV G     LG +  +  ++ T     ++ + VT EL +W +  +  
Sbjct: 63  MDEAARREALEEAGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWPE--MSS 120

Query: 682 RKRQWFSIDDAL 717
           RKR W ++  A+
Sbjct: 121 RKRTWATVQQAM 132


>06_01_1033 - 8080179-8080685
          Length = 168

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
 Frame = +1

Query: 340 MVKEKPNSIRIYDDE-GFRRRAACIC--VRSDAE-TEVLLVTSSRRP----DNWIXXXXX 495
           MV  +   ++ Y D  G R    CI   VR D    EVL+++S ++     D  +     
Sbjct: 5   MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGGVEVLVISSQKKGAAAGDVVMFPKGG 64

Query: 496 XXXXXXXXXTAMREVLEEAGVIGKLGRCLG--VFENREHKHRTE--VYVMTVTQELPEWE 663
                     A RE LEEAGV+G++G  LG   + +R +    E  V+ + VT EL  W 
Sbjct: 65  WELDESVDEAARREALEEAGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDELDRWP 124

Query: 664 DSRLMGRKRQWFSIDDAL 717
           +  +  R+R W S   A+
Sbjct: 125 E--MAARRRSWVSPQQAM 140


>07_01_0793 -
           6169661-6169936,6170942-6171025,6171473-6171590,
           6172917-6172987
          Length = 182

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
 Frame = +1

Query: 526 AMREVLEEAGVIGKLGRCLGVFENREHKH----------RTEVYVMTVTQELPEWEDSRL 675
           A RE +EEAGV G L + LG ++ +   H          R  V+ + V +EL  W +   
Sbjct: 76  AAREAIEEAGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFALRVKEELASWPEQST 135

Query: 676 MGRKRQWFSIDDAL 717
             RKR W ++ +A+
Sbjct: 136 --RKRTWLTLSEAV 147


>02_04_0020 -
           18956282-18956461,18956591-18956740,18957934-18958017,
           18958283-18958403,18958525-18958604
          Length = 204

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
 Frame = +1

Query: 430 ETEVLLVTSSRRPDNWIXXXXXXXXXXXXXXTAMREVLEEAGVIGKLGRC-LG--VFENR 600
           + EVL+V++  R D  +               A RE +EEAGV G + R  LG  VF+++
Sbjct: 49  QVEVLMVSTPNRAD-MVFPKGGWEDDEEVYEAASREAMEEAGVKGIVNRTTLGHWVFKSK 107

Query: 601 EHKHRTE--------VYVMTVTQELPEWEDSRLMGRKRQWFSIDDA 714
             ++ +         ++ M VT+EL  W +    GR+  W S  +A
Sbjct: 108 SSQNSSSPRGACKGYIFAMEVTEELESWPEQATHGRR--WVSPGEA 151


>06_01_0197 - 1525945-1526622
          Length = 225

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 546 GSRSDRETRTMSWSIREPRTQTPNRGLCY 632
           G R  R  R +S+S+R PRT  P RG+ +
Sbjct: 136 GLRPPRALRRLSYSLRCPRTGGPARGVVH 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,329,923
Number of Sequences: 37544
Number of extensions: 350711
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)