Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16h03
(671 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 26 0.28
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 24 1.1
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 23 2.6
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 23 2.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.1
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 21 8.1
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 26.2 bits (55), Expect = 0.28
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 447 ESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 277
+ ++QQ+R + ++ LR E + V E GG G+ D S ++ T+
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTT 221
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.2 bits (50), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 70 WRQTAFCFYKVRRATTKN 17
W Q FC+++ AT KN
Sbjct: 533 WFQNTFCYFRRNAATWKN 550
Score = 22.6 bits (46), Expect = 3.5
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = -3
Query: 468 FLKVNSLESEEQQERHHK 415
F++ +SL ++QQ++HH+
Sbjct: 91 FMQQHSLYLQQQQQQHHQ 108
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 23.0 bits (47), Expect = 2.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 389 CLRPWVCSVL*WRSCCSS 442
C+ P V SVL W C+S
Sbjct: 38 CIHPTVFSVLFWLGYCNS 55
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 23.0 bits (47), Expect = 2.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 389 CLRPWVCSVL*WRSCCSS 442
C+ P V SVL W C+S
Sbjct: 486 CIHPTVFSVLFWLGYCNS 503
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 17 VLCCRAPHLI 46
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 17 VLCCRAPHLI 46
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 17 VLCCRAPHLI 46
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 17 VLCCRAPHLI 46
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 17 VLCCRAPHLI 46
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 17 VLCCRAPHLI 46
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 17 VLCCRAPHLI 46
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 17 VLCCRAPHLI 46
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2
Query: 164 LLSLHSSLQCGPSRPHRSLRTLTLLPNS 247
+L ++ L C + +S+R +T LP++
Sbjct: 208 MLGIYCRLYCYAQKHVKSIRAVTKLPDT 235
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,195
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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