Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16h02
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    47   2e-06
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    47   2e-06
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    37   0.003
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    34   0.018
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.51 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   3.6  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    26   4.8  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   4.8  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   8.4  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 26/88 (29%), Positives = 41/88 (46%)
 Frame = +3

Query: 456 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSAAA 635
           F    +  AI  YT   +  P     F  R   YLK+  P  CI+DC  A+EL+ + A A
Sbjct: 410 FKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKA 469

Query: 636 YKFRGRAYRLLGKFEESSHDLCESLKID 719
           Y  + +A  +L  + +      E+ ++D
Sbjct: 470 YVRKAQALFMLKDYNKCIDACNEASEVD 497


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 28/90 (31%), Positives = 42/90 (46%)
 Frame = +3

Query: 450 RAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSA 629
           +A+ +++Y  AI+ YT AI  +    + F+ R   Y  +      IKD + AL L+    
Sbjct: 160 KAYGQKEYANAIDYYTQAITCS-HDPIFFSNRAACYAAIGDFEQVIKDTSEALSLDSSYV 218

Query: 630 AAYKFRGRAYRLLGKFEESSHDLCESLKID 719
            A   R  AY  LGK +E+  D   S   D
Sbjct: 219 KALNRRSAAYEQLGKLDEALMDSTVSCIFD 248


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +3

Query: 462 EQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELN 617
           ++ Y + ++  T A+ +NP    +  +RG  YL+L  P+   +D  H+LEL+
Sbjct: 54  KKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELD 105


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 456 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVYLKLNKPNACIKDCTHALELNCDSA 629
           + E+KY EAI  YT AI L   SAL   ++ R   Y+++ +    + D   +  +  D  
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSDRIKPDVP 93

Query: 630 AAYKFRGRAYRLLGKFEES 686
                  +AY  L    E+
Sbjct: 94  KTQSRIRQAYEGLSILNEA 112



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 543 RGQVYLKLNKPNACIKDCTHALELNCDSAAAYKFRGRAYRLLGKFEESSHDLCESLKIDY 722
           + QVY+  N  +   K     L LN  +  A   RG+     G+  ++     E+LK+D 
Sbjct: 149 KAQVYIFQNDMDRAQKIAHDVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDP 208

Query: 723 D 725
           D
Sbjct: 209 D 209


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 634 AAALSQFNSKACVQSLIHAFGLFSFRYTCPRLANNKALCGFNCMAAVYRLIASSYFCSEN 455
           A  +SQF  K   +  IH + L    Y+      N  LC F  +  +   + SS F  ++
Sbjct: 713 AKFISQFLEKTSTEFQIHLWYLLYQAYSSAHRPYNSLLCAFQSLKIILIRLCSSSFSIQD 772

Query: 454 A 452
           A
Sbjct: 773 A 773


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 582 CIKDCTHALELNCDSAAAYKFRGRAYRLLG-KFEESSHDLCESL 710
           C ++  ++L    D+A  Y F  + YRL    FE  SH   ESL
Sbjct: 348 CTQETVYSLLTGNDTACVYPFPNKPYRLPDVDFEIFSHCSFESL 391


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 621 DSAAAYKFRGRAYRLLGKFEES-SHDLCESLKID 719
           +S   YKF    ++L G  EES  + LC+SL  D
Sbjct: 190 ESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKD 223


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 642 FRGRAYRLLGKFEESSHDLCESL 710
           FRGRAY L       S+D+C  L
Sbjct: 668 FRGRAYPLSSHLHHVSNDVCRGL 690


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 108 LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 233
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,557
Number of Sequences: 5004
Number of extensions: 52208
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)