Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16g22
         (160 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     31   0.17 
10_05_0042 + 8481227-8481764,8482291-8482418,8483349-8483933,848...    27   2.7  
06_03_1053 + 27224824-27225618                                         25   6.3  

>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 22  ADVANLQSVSEVNDLKTQIISIVPRNIVN 108
           AD+ NLQ++S +N  +  +I ++P N+ N
Sbjct: 168 ADLQNLQNLSSINLRRNYLIGLIPNNLFN 196


>10_05_0042 +
           8481227-8481764,8482291-8482418,8483349-8483933,
           8484033-8484061,8485221-8485612,8486038-8486454,
           8486587-8486668,8487116-8487686
          Length = 913

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 79  LFEFLNHLLRKLIANWQRRRLTVWI 5
           LF+  +HL R  +++WQ  R+  WI
Sbjct: 728 LFKSAHHLQRLFLSDWQFSRVPSWI 752


>06_03_1053 + 27224824-27225618
          Length = 264

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 64  NHLLRKLIANWQRRRLTV 11
           N  L K++ N QRRRLTV
Sbjct: 233 NDALMKVVTNLQRRRLTV 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,581
Number of Sequences: 37544
Number of extensions: 24060
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 33
effective length of database: 13,554,396
effective search space used: 257533524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)