Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16g22
         (160 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z73424-2|CAA97780.1|  287|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    25   9.6  

>Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical
           protein K09E4.4 protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 68  FKSFTSETDCKLATSAFDSL 9
           + +FTSET C L+ S FD L
Sbjct: 274 WNNFTSETSCMLSVSPFDPL 293


>Z73424-2|CAA97780.1|  287|Caenorhabditis elegans Hypothetical
           protein C44B9.3 protein.
          Length = 287

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 76  FEFLNHLLRKLIANWQRRRLTVWI 5
           FE++N + R  + +W + RL  W+
Sbjct: 52  FEYINGIARPTVTHWPKGRLNDWM 75


>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 72  SNNFYCTTKYCKSNFKRKL 128
           SNN+Y T+K C+ N   K+
Sbjct: 287 SNNWYNTSKSCEENILEKM 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.130    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,139
Number of Sequences: 27780
Number of extensions: 27953
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)