Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16g14
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   228   4e-61
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    30   0.27 
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    30   0.27 
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    30   0.27 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.7  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  228 bits (558), Expect = 4e-61
 Identities = 111/177 (62%), Positives = 132/177 (74%)
 Frame = +3

Query: 33  AVNNISXXRKFVGXGVFKAKLNEFLXRELAXDGYSGXEVRVTPIRSXIIIMAXRTXXXLG 212
           A   IS  RKFV  GVF A+LNEF  REL+ +GYSG EVRVTP RS III A  T   LG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 213 XKGXKIRELTSVVXKRFNIPXQSVKLYAEKXATRGLCAIAQAESLKXKLIGGXAVRRACY 392
            KG +IRELT++V KRF     +V+LYAEK   RGLCA+AQ ESL+ KL+ G AVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 393 GVXRFIMESGARGCEVVVSGKLRGQRAKSMKFVNGLMIHSGDPCNDYVNTATRHXLL 563
           GV R++ME+GA+GCEVV+SGKLR  RAKSMKF +G MIHSG P  D++++ATRH LL
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLL 179


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 405  FIMESGARGCEVVVSGKLRGQRAKSMKFVNGLMIHSGDPCNDYVNTATRH 554
            F ME   +  + ++  +L+     S K  + ++I  GD  ND + T+ RH
Sbjct: 1870 FAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,485
Number of Sequences: 5004
Number of extensions: 24941
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)