Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16g14
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 240 4e-64
Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 31 0.57
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.57
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 31 0.57
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 31 0.57
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 31 0.57
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 31 0.57
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 31 0.57
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 31 0.57
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 31 0.57
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 31 0.57
Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical pr... 30 1.3
U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein... 30 1.3
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 240 bits (588), Expect = 4e-64
Identities = 118/179 (65%), Positives = 139/179 (77%), Gaps = 1/179 (0%)
Frame = +3
Query: 30 MAVN-NISXXRKFVGXGVFKAKLNEFLXRELAXDGYSGXEVRVTPIRSXIIIMAXRTXXX 206
MA N N++ +K V G+FKA+LN FL +ELA DGYSG EVR TP R+ +IIMA RT
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 207 LGXKGXKIRELTSVVXKRFNIPXQSVKLYAEKXATRGLCAIAQAESLKXKLIGGXAVRRA 386
LG +G +I+ELTSVV KRF SV+LYAEK + RGLCA+AQ ESL+ KL+GG AVRRA
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120
Query: 387 CYGVXRFIMESGARGCEVVVSGKLRGQRAKSMKFVNGLMIHSGDPCNDYVNTATRHXLL 563
CYGV RFIMESGA+G EV+VSGKLRGQRAK+MKFV+GLMIHSG P NDY+ A RH L
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQL 179
>Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical
protein Y49E10.6 protein.
Length = 136
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein 71
protein.
Length = 136
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 302 GGYSXPLRYRPGRISKXQAYRRSRCTSXLLWXSPF 406
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,805,149
Number of Sequences: 27780
Number of extensions: 143567
Number of successful extensions: 279
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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