Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16f23
         (313 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49148-1|CAA89008.1|  159|Homo sapiens ribosomal protein L29 pro...    89   3e-18
U49083-1|AAC50647.1|  159|Homo sapiens HIP protein.                    89   3e-18
U10248-1|AAC50499.1|  159|Homo sapiens ribosomal protein L29 pro...    89   3e-18
BC071909-1|AAH71909.1|  161|Homo sapiens ribosomal protein L29 p...    89   3e-18
BC071663-1|AAH71663.1|  159|Homo sapiens ribosomal protein L29 p...    89   3e-18
BC070481-1|AAH70481.1|  159|Homo sapiens ribosomal protein L29 p...    89   3e-18
BC070190-1|AAH70190.1|  159|Homo sapiens ribosomal protein L29 p...    89   3e-18
BC008926-1|AAH08926.1|  159|Homo sapiens ribosomal protein L29 p...    89   3e-18
AL450405-1|CAI16223.1|  172|Homo sapiens protein ( Human DNA seq...    89   3e-18
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA  topoisomerase II pro...    29   2.2  
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot...    29   2.2  
U54831-1|AAB01982.1|  350|Homo sapiens topoisomerase IIb protein.      29   2.2  
BC021863-1|AAH21863.1|  485|Homo sapiens Unknown (protein for IM...    29   2.2  
AJ011721-1|CAA09753.1|  717|Homo sapiens topoisomerase II beta p...    29   2.2  
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be...    29   2.2  
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b...    29   2.2  
AK130111-1|BAC85291.1|  148|Homo sapiens protein ( Homo sapiens ...    28   5.0  
BC028614-1|AAH28614.1|  963|Homo sapiens Ras interacting protein...    27   8.8  
BC021860-1|AAH21860.1|  317|Homo sapiens RASIP1 protein protein.       27   8.8  
AY378097-1|AAR24580.1|  962|Homo sapiens Ras-interacting protein...    27   8.8  
AK000408-1|BAA91145.1|  317|Homo sapiens protein ( Homo sapiens ...    27   8.8  

>Z49148-1|CAA89008.1|  159|Homo sapiens ribosomal protein L29
           protein.
          Length = 159

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
           MAKSKNHT HNQ+RK HRNGIKKPR  R+ES  G+DPKFLRN RF KK N K  K++
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57


>U49083-1|AAC50647.1|  159|Homo sapiens HIP protein.
          Length = 159

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
           MAKSKNHT HNQ+RK HRNGIKKPR  R+ES  G+DPKFLRN RF KK N K  K++
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57


>U10248-1|AAC50499.1|  159|Homo sapiens ribosomal protein L29
           protein.
          Length = 159

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
           MAKSKNHT HNQ+RK HRNGIKKPR  R+ES  G+DPKFLRN RF KK N K  K++
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57


>BC071909-1|AAH71909.1|  161|Homo sapiens ribosomal protein L29
           protein.
          Length = 161

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
           MAKSKNHT HNQ+RK HRNGIKKPR  R+ES  G+DPKFLRN RF KK N K  K++
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57


>BC071663-1|AAH71663.1|  159|Homo sapiens ribosomal protein L29
           protein.
          Length = 159

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
           MAKSKNHT HNQ+RK HRNGIKKPR  R+ES  G+DPKFLRN RF KK N K  K++
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57


>BC070481-1|AAH70481.1|  159|Homo sapiens ribosomal protein L29
           protein.
          Length = 159

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
           MAKSKNHT HNQ+RK HRNGIKKPR  R+ES  G+DPKFLRN RF KK N K  K++
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57


>BC070190-1|AAH70190.1|  159|Homo sapiens ribosomal protein L29
           protein.
          Length = 159

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
           MAKSKNHT HNQ+RK HRNGIKKPR  R+ES  G+DPKFLRN RF KK N K  K++
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57


>BC008926-1|AAH08926.1|  159|Homo sapiens ribosomal protein L29
           protein.
          Length = 159

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
           MAKSKNHT HNQ+RK HRNGIKKPR  R+ES  G+DPKFLRN RF KK N K  K++
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57


>AL450405-1|CAI16223.1|  172|Homo sapiens protein ( Human DNA
           sequence from clone RP11-632C17 on chromosome 6 Contains
            the gene for a novel protein similar to ribosomal
           protein L29  ).
          Length = 172

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = +3

Query: 48  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 218
           MAKSKNHT HNQ+RK HRNGIKKPR  R+ES  G+DPKFLRN RF KK N K  K++
Sbjct: 16  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 72


>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA  topoisomerase II protein.
          Length = 1031

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 36   KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
            K+ K + S+N  ++N  RK  +   KKP+KT  +    +D
Sbjct: 950  KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 989


>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 36   KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
            K+ K + S+N  ++N  RK  +   KKP+KT  +    +D
Sbjct: 1540 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1579


>U54831-1|AAB01982.1|  350|Homo sapiens topoisomerase IIb protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 36  KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
           K+ K + S+N  ++N  RK  +   KKP+KT  +    +D
Sbjct: 269 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 308


>BC021863-1|AAH21863.1|  485|Homo sapiens Unknown (protein for
           IMAGE:4999541) protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 36  KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
           K+ K + S+N  ++N  RK  +   KKP+KT  +    +D
Sbjct: 404 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 443


>AJ011721-1|CAA09753.1|  717|Homo sapiens topoisomerase II beta
           protein.
          Length = 717

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 36  KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
           K+ K + S+N  ++N  RK  +   KKP+KT  +    +D
Sbjct: 636 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 675


>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
            protein.
          Length = 1598

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 36   KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
            K+ K + S+N  ++N  RK  +   KKP+KT  +    +D
Sbjct: 1517 KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1556


>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
            isozyme variant protein.
          Length = 1009

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 36   KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 155
            K+ K + S+N  ++N  RK  +   KKP+KT  +    +D
Sbjct: 928  KKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 967


>AK130111-1|BAC85291.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26601 fis, clone LVR00207. ).
          Length = 148

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 312 FFFIFYAF-ICLYLMFISWPLLL 247
           F+F FY F I +YL F+ W L L
Sbjct: 43  FYFYFYLFFIFIYLFFLRWSLAL 65


>BC028614-1|AAH28614.1|  963|Homo sapiens Ras interacting protein 1
           protein.
          Length = 963

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 43  SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 153
           + W S R        A+L  ++S  Q  PG  PP AW
Sbjct: 849 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 885


>BC021860-1|AAH21860.1|  317|Homo sapiens RASIP1 protein protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 43  SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 153
           + W S R        A+L  ++S  Q  PG  PP AW
Sbjct: 203 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 239


>AY378097-1|AAR24580.1|  962|Homo sapiens Ras-interacting protein
           protein.
          Length = 962

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 43  SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 153
           + W S R        A+L  ++S  Q  PG  PP AW
Sbjct: 848 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 884


>AK000408-1|BAA91145.1|  317|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20401 fis, clone KAT00901. ).
          Length = 317

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 43  SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 153
           + W S R        A+L  ++S  Q  PG  PP AW
Sbjct: 203 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 239


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,089,368
Number of Sequences: 237096
Number of extensions: 894671
Number of successful extensions: 2047
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2047
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)