Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16f20
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 308 VVSPV-LNQWERLLMESPASIILTASSKVQ 222
           ++SP+ LN+   +L  SPA IIL   SK +
Sbjct: 10  LLSPLTLNRITHILANSPAIIILGQDSKAK 39


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 308 VVSPV-LNQWERLLMESPASIILTASSKVQ 222
           ++SP+ LN+   +L  SPA IIL   SK +
Sbjct: 48  LLSPLTLNRITHILANSPAIIILGQDSKAK 77


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 106  GESYHHHRIVQEYLSESYVNDMSCIERDVTAMRR 207
            G S  H R + E++  S  +D S +ER  TA R+
Sbjct: 1321 GSSEDHRRPLSEHIYSSIDSDYSTLER--TAWRQ 1352



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 284  WERLLMESPASIILTASSKVQLPIFKRRI 198
            WERL    P++  ++  SK    ++KR I
Sbjct: 1197 WERLRYAIPSAGDISIESKSSPLVYKRNI 1225


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 347 ICSNTLRTLSSMPVVSPVLNQWERLLME 264
           ICS  +  LS   +  PV   WER  ++
Sbjct: 167 ICSTPIGNLSHALLKDPVKEFWERRTLQ 194


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 347 ICSNTLRTLSSMPVVSPVLNQWERLLME 264
           ICS  +  LS   +  PV   WER  ++
Sbjct: 220 ICSTPIGNLSHALLKDPVKEFWERRTLQ 247


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 196 AMRRLKIGSCTFDEAVKMIDAGDSIKSLSHWFSTGETTGIDDNVRKV 336
           A+   K G  +   A  +   G  IK++SH  +     GID+ V ++
Sbjct: 493 ALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRI 539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,928
Number of Sequences: 438
Number of extensions: 3970
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)