Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16f19
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 52 4e-07
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 52 4e-07
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 49 2e-06
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 49 2e-06
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 48 7e-06
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 48 7e-06
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 48 7e-06
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 47 9e-06
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 47 9e-06
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 47 9e-06
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 47 9e-06
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 44 9e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 44 9e-05
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 42 3e-04
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 42 3e-04
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 42 3e-04
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 41 6e-04
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 41 6e-04
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 41 6e-04
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 41 6e-04
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 41 8e-04
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 41 8e-04
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 41 8e-04
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 40 0.001
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 40 0.001
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 40 0.001
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 40 0.001
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 39 0.003
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 39 0.003
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 39 0.003
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 38 0.006
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 38 0.006
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 38 0.006
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 38 0.006
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 38 0.006
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 38 0.006
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 37 0.010
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 37 0.013
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 36 0.017
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 36 0.023
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 35 0.053
AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical ... 34 0.070
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.092
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.12
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.16
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 33 0.16
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 32 0.28
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 32 0.37
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 31 0.86
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 30 1.1
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 30 1.1
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 30 1.1
U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81128-3|CAB03401.1| 410|Caenorhabditis elegans Hypothetical pr... 29 2.0
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p... 29 2.6
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 3.5
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 3.5
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 29 3.5
AF026208-2|AAB71269.3| 774|Caenorhabditis elegans Prion-like-(q... 29 3.5
Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical p... 28 4.6
Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z69883-2|CAA93740.1| 264|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical pr... 28 6.0
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 28 6.0
AL033514-28|CAA22089.1| 340|Caenorhabditis elegans Hypothetical... 28 6.0
AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein. 28 6.0
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 27 8.0
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical... 27 8.0
AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical ... 27 8.0
AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA ... 27 8.0
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 52.0 bits (119), Expect = 3e-07
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKG 376
RIY+G L+ + +++ +F YG+I +++ FGFV+F ++ A+DA+ NG G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 377 KNI 385
+ +
Sbjct: 64 ERV 66
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 52.0 bits (119), Expect = 3e-07
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKG 376
RIY+G L+ + +++ +F YG+I +++ FGFV+F ++ A+DA+ NG G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 377 KNI 385
+ +
Sbjct: 64 ERV 66
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 52.0 bits (119), Expect = 3e-07
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKG 376
RIY+G L+ + +++ +F YG+I +++ FGFV+F ++ A+DA+ NG G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 377 KNI 385
+ +
Sbjct: 64 ERV 66
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSAQDAIKKA 355
+YVG TT EEL ++F G+I+ + + R F F++FAEE SAQ A+++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 356 NGSVFKGKNIPVRAA 400
NG+ F G+ + V A
Sbjct: 67 NGAEFNGRPLRVNLA 81
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +2
Query: 194 LRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFK 373
+R+Y+G L + + ++ +F YGK+ +I+ FGFV F ++ A DA+ NG
Sbjct: 2 VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELC 61
Query: 374 GKNI 385
G+ +
Sbjct: 62 GERV 65
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSAQDAIKKA 355
+YVG + T EE+ +YF G ++ + + R F FV+F+EE+ AQ A+++
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 356 NGSVFKGKNIPVRAA 400
NG F G+N+ V A
Sbjct: 68 NGVAFNGRNLRVNYA 82
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 49.2 bits (112), Expect = 2e-06
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Frame = +2
Query: 149 LTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRN--------FG 304
L D D S ++++G LS TT E L DYF ++G+++ +V R+ FG
Sbjct: 30 LNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFG 89
Query: 305 FVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQME 484
F+ F + SS D + GK I + A KR + VT +V L T
Sbjct: 90 FITFVDPSSV-DKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIG-GLSATSTL 147
Query: 485 DESEEAYDNYGNNND 529
++ ++ ++ YG D
Sbjct: 148 EDMKQYFETYGKVED 162
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 49.2 bits (112), Expect = 2e-06
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Frame = +2
Query: 149 LTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRN--------FG 304
L D D S ++++G LS TT E L DYF ++G+++ +V R+ FG
Sbjct: 30 LNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFG 89
Query: 305 FVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQME 484
F+ F + SS D + GK I + A KR + VT +V L T
Sbjct: 90 FITFVDPSSV-DKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIG-GLSATSTL 147
Query: 485 DESEEAYDNYGNNND 529
++ ++ ++ YG D
Sbjct: 148 EDMKQYFETYGKVED 162
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNR---NFGFVQFAEESSAQDAIKKANGSV 367
++YVG L + T +EL + F ++G+I + V R F FV++ + A+DA++ +GS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 368 FKGKNIPVRAATDKRR 415
G V +T +RR
Sbjct: 64 ICGVRARVELSTGQRR 79
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNR---NFGFVQFAEESSAQDAIKKANGSV 367
++YVG L + T +EL + F ++G+I + V R F FV++ + A+DA++ +GS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 368 FKGKNIPVRAATDKRR 415
G V +T +RR
Sbjct: 64 ICGVRARVELSTGQRR 79
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNR---NFGFVQFAEESSAQDAIKKANGSV 367
++YVG L + T +EL + F ++G+I + V R F FV++ + A+DA++ +GS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 368 FKGKNIPVRAATDKRR 415
G V +T +RR
Sbjct: 64 ICGVRARVELSTGQRR 79
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 47.2 bits (107), Expect = 9e-06
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSAQDAIKKA 355
+YVG TT ++L +YF Q G + + + R F FV+F EE++AQ A+ +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 356 NGSVFKGKNIPVRAATDK 409
NG F G+ + V A ++
Sbjct: 66 NGVDFNGRALRVNLAQNR 83
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 47.2 bits (107), Expect = 9e-06
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSAQDAIKK 352
+I+VG L+ NTT + + +++ Q+G+I IIV +R FGFV F+ ++ DA K
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV-DAAMK 82
Query: 353 ANGSVFKGKNI-PVRAA--TDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYG 517
+ GK + P RA DK R V+ V ++ ED E + YG
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGV--REDHTEDMLTEYFTKYG 138
Score = 33.1 bits (72), Expect = 0.16
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Frame = +2
Query: 167 DMKQKSTAHL---RIYVGALSDNTTVEELYDYFIQYGKI--DGIIVN------RNFGFVQ 313
D K +S +++ R+YV + ++ T + L +YF +YG + II++ R FGFV
Sbjct: 102 DDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161
Query: 314 FAEESSAQDAIKKANGSVFKGKNIPVRAATDK 409
F + S + + + V G VR K
Sbjct: 162 FDDHDSVDQCVLQKSHMV-NGHRCDVRKGLSK 192
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 47.2 bits (107), Expect = 9e-06
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSAQDAIKK 352
+I+VG L+ NTT + + +++ Q+G+I IIV +R FGFV F+ ++ DA K
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV-DAAMK 82
Query: 353 ANGSVFKGKNI-PVRAA--TDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYG 517
+ GK + P RA DK R V+ V ++ ED E + YG
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGV--REDHTEDMLTEYFTKYG 138
Score = 33.1 bits (72), Expect = 0.16
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Frame = +2
Query: 167 DMKQKSTAHL---RIYVGALSDNTTVEELYDYFIQYGKI--DGIIVN------RNFGFVQ 313
D K +S +++ R+YV + ++ T + L +YF +YG + II++ R FGFV
Sbjct: 102 DDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161
Query: 314 FAEESSAQDAIKKANGSVFKGKNIPVRAATDK 409
F + S + + + V G VR K
Sbjct: 162 FDDHDSVDQCVLQKSHMV-NGHRCDVRKGLSK 192
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 47.2 bits (107), Expect = 9e-06
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSAQDAIKK 352
+I+VG L+ NTT + + +++ Q+G+I IIV +R FGFV F+ ++ DA K
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV-DAAMK 82
Query: 353 ANGSVFKGKNI-PVRAA--TDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYG 517
+ GK + P RA DK R V+ V ++ ED E + YG
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGV--REDHTEDMLTEYFTKYG 138
Score = 33.1 bits (72), Expect = 0.16
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Frame = +2
Query: 167 DMKQKSTAHL---RIYVGALSDNTTVEELYDYFIQYGKI--DGIIVN------RNFGFVQ 313
D K +S +++ R+YV + ++ T + L +YF +YG + II++ R FGFV
Sbjct: 102 DDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161
Query: 314 FAEESSAQDAIKKANGSVFKGKNIPVRAATDK 409
F + S + + + V G VR K
Sbjct: 162 FDDHDSVDQCVLQKSHMV-NGHRCDVRKGLSK 192
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRN----FGFVQFAEESSAQDAIKKANGS 364
++YVG L + +E+ D F +YG+I + + F FV+F + A+DA++ +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 365 VFKGKNIPV 391
F G+ I V
Sbjct: 70 EFDGRRIRV 78
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRN----FGFVQFAEESSAQDAIKKANGS 364
++YVG L + +E+ D F +YG+I + + F FV+F + A+DA++ +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 365 VFKGKNIPV 391
F G+ I V
Sbjct: 70 EFDGRRIRV 78
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 143 DNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--NRNFGFVQF 316
D LT +++ K+ + +YVG +S TT +L D F YG I + + + + FV++
Sbjct: 221 DKLTFEQVFNSTKAD-NTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRY 279
Query: 317 AEESSAQDAIKKANGSVFKGKNI 385
++ A AI + NG G +
Sbjct: 280 EKKECATKAIMEMNGKEMAGNQV 302
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Frame = +2
Query: 164 IDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRN--------FGFVQFA 319
++M+ ++ H ++VG LS + + E L F ++G++ V R+ +GFV F
Sbjct: 125 MEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFP 184
Query: 320 EESSAQDAIKKANG 361
+ +A++AI NG
Sbjct: 185 NKQNAENAIAGMNG 198
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 8/58 (13%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIV-------NRNFGFVQFAEESSAQDAI 346
++++G LS +TT E+L +YF Q+G +D I++ +R FGFV FA SA+ A+
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 107
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 8/58 (13%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIV-------NRNFGFVQFAEESSAQDAI 346
++++G LS +TT E+L +YF Q+G +D I++ +R FGFV FA SA+ A+
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 127
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 8/58 (13%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIV-------NRNFGFVQFAEESSAQDAI 346
++++G LS +TT E+L +YF Q+G +D I++ +R FGFV FA SA+ A+
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 128
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 41.1 bits (92), Expect = 6e-04
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Frame = +2
Query: 77 QRNQNLLTISQKYSCNK*ITMADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYF 256
Q +Q L T++++ ++ + + + + K +T H ++VG LS ++L + F
Sbjct: 96 QASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF 155
Query: 257 IQYGKI-DGIIV-------NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 412
+G + D ++ ++ +GFV + + A+ AI++ NG + I AT K
Sbjct: 156 QPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKP 215
Query: 413 RDVETVTIYPE 445
D E + Y E
Sbjct: 216 GDQEKPSHYNE 226
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKG 376
R+Y+G + N ++ + YGKI+ I + F FV F + A+DA +G +G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 377 KNI 385
++
Sbjct: 63 SSM 65
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKG 376
R+Y+G + N ++ + YGKI+ I + F FV F + A+DA +G +G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 377 KNI 385
++
Sbjct: 63 SSM 65
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKG 376
R+Y+G + N ++ + YGKI+ I + F FV F + A+DA +G +G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 377 KNI 385
++
Sbjct: 63 SSM 65
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 40.7 bits (91), Expect = 8e-04
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +2
Query: 173 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI-DGIIV-------NRNFGFVQFAEES 328
K +T H ++VG LS ++L + F +G + D ++ ++ +GFV + +
Sbjct: 15 KIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKRE 74
Query: 329 SAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPE 445
A+ AI++ NG + I AT K D E + Y E
Sbjct: 75 EAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE 113
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 40.7 bits (91), Expect = 8e-04
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +2
Query: 173 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI-DGIIV-------NRNFGFVQFAEES 328
K +T H ++VG LS ++L + F +G + D ++ ++ +GFV + +
Sbjct: 25 KIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKRE 84
Query: 329 SAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPE 445
A+ AI++ NG + I AT K D E + Y E
Sbjct: 85 EAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE 123
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 40.7 bits (91), Expect = 8e-04
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +2
Query: 173 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI-DGIIV-------NRNFGFVQFAEES 328
K +T H ++VG LS ++L + F +G + D ++ ++ +GFV + +
Sbjct: 96 KIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKRE 155
Query: 329 SAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPE 445
A+ AI++ NG + I AT K D E + Y E
Sbjct: 156 EAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE 194
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 40.7 bits (91), Expect = 8e-04
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Frame = +2
Query: 179 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSA 334
+ T +I+VG L +T+ + L++YF Q+G I+ +V +R +GFV + +SA
Sbjct: 30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASA 89
Query: 335 QDAIKKANGSVFKGKNIPVRAA 400
+ A K N + G+ V A
Sbjct: 90 ERACKDPN-PIIDGRKANVNLA 110
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
Frame = +2
Query: 167 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVN-------RNFGFVQFAEE 325
++ + + ++V ++ E+L F ++G+I +V + FGFV FA++
Sbjct: 229 ELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQ 288
Query: 326 SSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAY 505
+A A++K N S+ +G + + +++ + + + + + + +
Sbjct: 289 DAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVK 348
Query: 506 DNYGNNNDHGFQEEFEEG---NNRPEIHDERGRGRGRG 610
+ + ND G ++ F + + DE GR +G G
Sbjct: 349 NIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFG 386
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +2
Query: 236 EELYDYFIQYGKIDGIIV-------NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 391
+ +YD F +G I V ++ +GFV F E SAQ AI+K NG + K + V
Sbjct: 159 KSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
Frame = +2
Query: 167 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVN-------RNFGFVQFAEE 325
++ + + ++V ++ E+L F ++G+I +V + FGFV FA++
Sbjct: 229 ELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQ 288
Query: 326 SSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAY 505
+A A++K N S+ +G + + +++ + + + + + + +
Sbjct: 289 DAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVK 348
Query: 506 DNYGNNNDHGFQEEFEEG---NNRPEIHDERGRGRGRG 610
+ + ND G ++ F + + DE GR +G G
Sbjct: 349 NIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFG 386
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +2
Query: 236 EELYDYFIQYGKIDGIIV-------NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 391
+ +YD F +G I V ++ +GFV F E SAQ AI+K NG + K + V
Sbjct: 159 KSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Frame = +2
Query: 173 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEES 328
+QK+ +++G + N+T+EE+ ++F G+I + +NF +++F + S
Sbjct: 48 EQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSS 107
Query: 329 SAQDAIKKANGSVFKGKNIPVRA 397
S ++A+ NGS+F+ + I V A
Sbjct: 108 SIENAL-VMNGSLFRSRPIVVTA 129
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Frame = +2
Query: 179 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI--------IVNRNFGFVQFAEESSA 334
KS + +++VG L + + ++L +F Q+GK+D I RNF F+ F EE SA
Sbjct: 105 KSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
Query: 335 QDA 343
A
Sbjct: 165 DKA 167
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = +2
Query: 179 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSA 334
K +I+VG +S E+L +F QYG++ V +R F FV+F
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGC 83
Query: 335 QDAIKKANGSVFKGKNIPVRAATDK 409
+ A+ A KGK++ V+ A +
Sbjct: 84 KLAL-AAREQTIKGKSVEVKPAKSR 107
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Frame = +2
Query: 179 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI--------IVNRNFGFVQFAEESSA 334
KS + +++VG L + + ++L +F Q+GK+D I RNF F+ F EE SA
Sbjct: 105 KSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
Query: 335 QDA 343
A
Sbjct: 165 DKA 167
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = +2
Query: 179 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSA 334
K +I+VG +S E+L +F QYG++ V +R F FV+F
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGC 83
Query: 335 QDAIKKANGSVFKGKNIPVRAATDK 409
+ A+ A KGK++ V+ A +
Sbjct: 84 KLAL-AAREQTIKGKSVEVKPAKSR 107
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVN-------RNFGFVQFAEESSAQDAIKKA 355
R+ V L T ++L +F +YG+I + R F FV F +E SA +A+ K+
Sbjct: 4 RLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKS 63
Query: 356 NGSVFKGKNIPV 391
N + F K + V
Sbjct: 64 NQTFFNSKKLTV 75
Score = 28.7 bits (61), Expect = 3.5
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVN--------RNFGFVQFAEESSAQDAIKK 352
R+++ L T ++L F +YG++ + V + F V+F +A A
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 353 ANGSVFKGKNIPVRAATDKR-----RDVETVTIYPEVP-PAVALKDTQMEDESEE 499
+G VFKG+ + + +KR + E V P+ P A A K+ + + EE
Sbjct: 340 LDGYVFKGRMMHILPGDEKRTKEGEEESEVVPDDPDNPLKAEAKKEKKKKSFKEE 394
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 287 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRD 418
++ FGFVQF A+ A+K G + G ++ ++ + + D
Sbjct: 687 LSMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKISHRENAD 730
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 38.7 bits (86), Expect = 0.003
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKI-------DGIIVN-RNFGFVQFAEESSAQDAIKKA 355
IYVG L + + L++ +Q G + D + N + FGFV+F E A AIK
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 356 NGSVFKGKNIPVRAAT--DKRRDVETVTIYPEVPPAV 460
N GK I V A+ +K DV + P V
Sbjct: 75 NMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEV 111
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 38.7 bits (86), Expect = 0.003
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKI-------DGIIVN-RNFGFVQFAEESSAQDAIKKA 355
IYVG L + + L++ +Q G + D + N + FGFV+F E A AIK
Sbjct: 25 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 84
Query: 356 NGSVFKGKNIPVRAAT--DKRRDVETVTIYPEVPPAV 460
N GK I V A+ +K DV + P V
Sbjct: 85 NMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEV 121
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Frame = +2
Query: 173 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEES 328
+QK+ +++G + N+T+EE+ ++F G I + +NF +++F + S
Sbjct: 54 EQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSS 113
Query: 329 SAQDAIKKANGSVFKGKNIPVRA 397
S ++A+ NGS+F+ + I V A
Sbjct: 114 SIENAL-VMNGSLFRSRPIVVTA 135
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKG 376
+++VG L DN +L F + K+ + +N+ FV EE I + G G
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHI-EEDDVDPIITRLTGYTIDG 62
Query: 377 KNIPVRAATDKRR 415
K + ++ +T K R
Sbjct: 63 KVVNIKKSTSKLR 75
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKIDGIIV-------NRNFGFVQFAEESSAQDAIKKAN 358
I++ L + +YD F +G I V ++ +GFV F E +AQ+AI+K N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 359 GSVFKGKNI 385
G + GK +
Sbjct: 182 GMLLAGKKV 190
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKG 376
+++VG L DN +L F + K+ + +N+ FV EE I + G G
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHI-EEDDVDPIITRLTGYTIDG 62
Query: 377 KNIPVRAATDKRR 415
K + ++ +T K R
Sbjct: 63 KVVNIKKSTSKLR 75
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKIDGIIV-------NRNFGFVQFAEESSAQDAIKKAN 358
I++ L + +YD F +G I V ++ +GFV F E +AQ+AI+K N
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 359 GSVFKGKNI 385
G + GK +
Sbjct: 119 GMLLAGKKV 127
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKIDGIIV-------NRNFGFVQFAEESSAQDAIKKAN 358
I++ L + +YD F +G I V ++ +GFV F E +AQ+AI+K N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 359 GSVFKGKNI 385
G + GK +
Sbjct: 182 GMLLAGKKV 190
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +2
Query: 197 RIYVGALSDNT-TVEELYDYFIQYGKIDGI--IVNRNFGFVQFAEESSAQDAIKKANGSV 367
R+++G ++ T +++ + F +GKI + + FGFVQF E SA ++ + NG
Sbjct: 84 RVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQGFGFVQFNEAGSADESCRSLNGMS 143
Query: 368 FKGKNIPVRAA 400
+K + V A
Sbjct: 144 WKACCLDVHLA 154
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 37.1 bits (82), Expect = 0.010
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Frame = +2
Query: 200 IYVGAL----SDNTTVEELYDYFIQYGKID--GIIVNRNFGFVQFAEESSAQDAIKKA-N 358
+Y+G L + T ++L D+F QYG I ++ + F++F +A+ A +++ N
Sbjct: 237 LYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFN 296
Query: 359 GSVFKGKNIPVR-AATDKRRDVET---VTIYPEVP 451
+ KGK + +R +R + VT P VP
Sbjct: 297 KTFIKGKRLTIRWGEPQAKRAADNSNYVTPVPSVP 331
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 36.7 bits (81), Expect = 0.013
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = +2
Query: 173 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEES 328
+Q+ T +YVG + +TV E+ ++F GK+ + + +NF FV+F +
Sbjct: 39 EQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLE 98
Query: 329 SAQDAIKKANGSVFKGKNIPV 391
S Q A+ +G++F+ + I V
Sbjct: 99 SVQLAL-VLSGTMFRNRKIMV 118
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 36.3 bits (80), Expect = 0.017
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSAQDAIKKA 355
+YVG +++ T + L FI +G + I + +R FGFV+F A AI
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 356 NGSVFKGKNIPVRAA 400
N S GK I V A
Sbjct: 73 NESELFGKTIRVNFA 87
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +2
Query: 173 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDG--IIVNRN------FGFVQFAEES 328
K +++ H ++VG L +L + F+++G++ II + N +GFV +
Sbjct: 125 KPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRRE 184
Query: 329 SAQDAIKKANGSVFKGKNIPVRAATDK 409
A+ AI + NG+ + I AT K
Sbjct: 185 DAERAIDEMNGAWLGRRTIRTNWATRK 211
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 34.7 bits (76), Expect = 0.053
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKIDGIIV------NRNFGFVQFAEESSAQDAIKKANG 361
IYV S+ E L + FIQ G + +I+ N F V+F +E S AI+ NG
Sbjct: 15 IYVANFSEEVDEELLEELFIQAGPVVKVILRDVRDSNAKFALVEFEDELSVLFAIELMNG 74
Query: 362 SVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQ 541
+ + V+ ++ E+ V D ++Y + N N +G
Sbjct: 75 VRLFNQELQVKPRNGTNQEELYKRKKGEIEERVRSVAAPDRDGRRDSYRDDRNRNRNGNN 134
Query: 542 EEFEEGNNRPEIH 580
+ + P H
Sbjct: 135 RDSWQQQQPPRHH 147
>AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical
protein Y65B4BL.3 protein.
Length = 347
Score = 34.3 bits (75), Expect = 0.070
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = -1
Query: 469 F*CNSRWHFWIYRYGFNISSFISCGSDRDIFSFEYATISFFYCILCT*FFGEL----HKS 302
F C+S +W++R N+ F+ G + F + A + F+ I CT F + H++
Sbjct: 69 FRCSSSTCYWLHRIVLNLPRFMISG---EFFVEKCAYLLIFFFISCTMFLYAVYLVKHET 125
Query: 301 KISINYNPIY-FP-VLYEVIIEF--FNSSIIT 218
++ I Y I P + +E+I+ F + S+II+
Sbjct: 126 ELKIRYRAILTLPSMFFEMIVSFLSYYSTIIS 157
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 33.9 bits (74), Expect = 0.092
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKI-------DGII-VNRNFGFVQFAEESSAQDAIKKA 355
+YV + + T+ EL F +G+I D + +++ GFV+F ++ A AIK
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 356 NGSVFKG 376
NGS+ G
Sbjct: 190 NGSIPSG 196
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +2
Query: 200 IYVGALSDNTTVEELYDYFIQYGKIDGIIV-------NRNFGFVQFAEESSAQDAIKKAN 358
++VG ++ T+ +L F YGKI + + R + F+++++++ A KKA+
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 359 GSVFKGKNIPV 391
G GK + V
Sbjct: 166 GIKVDGKRLVV 176
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.1 bits (72), Expect = 0.16
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Frame = +2
Query: 167 DMKQKSTAHL---RIYVGALSDNTTVEELYDYFIQYGKI--DGIIVN------RNFGFVQ 313
D K +S +++ R+YV + ++ T + L +YF +YG + II++ R FGFV
Sbjct: 64 DDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 123
Query: 314 FAEESSAQDAIKKANGSVFKGKNIPVRAATDK 409
F + S + + + V G VR K
Sbjct: 124 FDDHDSVDQCVLQKSHMV-NGHRCDVRKGLSK 154
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.1 bits (72), Expect = 0.16
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Frame = +2
Query: 167 DMKQKSTAHL---RIYVGALSDNTTVEELYDYFIQYGKI--DGIIVN------RNFGFVQ 313
D K +S +++ R+YV + ++ T + L +YF +YG + II++ R FGFV
Sbjct: 64 DDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 123
Query: 314 FAEESSAQDAIKKANGSVFKGKNIPVRAATDK 409
F + S + + + V G VR K
Sbjct: 124 FDDHDSVDQCVLQKSHMV-NGHRCDVRKGLSK 154
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Frame = +2
Query: 173 KQKSTAHLR-IYVGALSDNTTVEELYDYFIQYGKIDGIIVN--------RNFGFVQFAEE 325
++K+ A + +YVG + T EE+ +F G + + + + F +V+F E+
Sbjct: 70 EEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEK 129
Query: 326 SSAQDAIKKANGSVFKGKNIPV 391
Q+A+ + S+ +G+ I V
Sbjct: 130 EGMQNALAMTD-SLLRGRQIKV 150
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 194 LRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGF--VQFAEESSAQDAI 346
+R+Y+G + + + +F YGK+ I+ FG F ++S A D I
Sbjct: 2 VRVYIGRFPNRASDRDAEHFFCDYGKLPDAIMKNVFGVGCKDFQDQSDADDII 54
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 470 DTQMEDESEEAYDNYGNNNDHGFQEEFEEGNNRPEIHDERGRGRGRG 610
D E ++EEA DN G +D+G + + EE ++ E + G RG G
Sbjct: 181 DNGEESDNEEASDN-GEASDNGEESDNEEASDNGE-ESDNGEERGNG 225
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVN--------RNFGFVQFAEESSAQDAIKK 352
RIYVG++S + L F +G I I ++ + F FV++ +A A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 353 ANGSVFKGKNIPVRA 397
NG + G+N+ V +
Sbjct: 163 MNGQMLGGRNLKVNS 177
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVN--------RNFGFVQFAEESSAQDAIKK 352
RIYVG++S + L F +G I I ++ + F FV++ +A A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 353 ANGSVFKGKNIPVRA 397
NG + G+N+ V +
Sbjct: 163 MNGQMLGGRNLKVNS 177
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 197 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVN--------RNFGFVQFAEESSAQDAIKK 352
RIYVG++S + L F +G I I ++ + F FV++ +A A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 353 ANGSVFKGKNIPVRA 397
NG + G+N+ V +
Sbjct: 163 MNGQMLGGRNLKVNS 177
>U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical
protein C06A8.5 protein.
Length = 479
Score = 29.9 bits (64), Expect = 1.5
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 10/134 (7%)
Frame = +2
Query: 236 EELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQDAIKK--ANGSVFK--------GKNI 385
E+L D ++ + I++R+ E + I K ANGSV G++
Sbjct: 57 EQLRDLHVEMDGKNATILDRDALIDSLRSEIDKLEKINKEFANGSVIPEHDDSNSFGESE 116
Query: 386 PVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFEEGNN 565
+R + D ++ ET T E + + ++DE E D+ + +H + E
Sbjct: 117 MLRISEDCQKYKETATALYERNAELEKEAVNLKDEIESMMDHIRDLKNHMETRDEEIARL 176
Query: 566 RPEIHDERGRGRGR 607
E+ DER G+
Sbjct: 177 EGELFDERNSHEGK 190
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/88 (21%), Positives = 37/88 (42%)
Frame = +2
Query: 299 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQ 478
FGF+QF E++ A+ + N + G+++ A DK D + E + +
Sbjct: 139 FGFIQFVEKADAEKGREFFNTNKVLGRSVAADWALDK--DTYETNAHEEKQHLKKVVKVE 196
Query: 479 MEDESEEAYDNYGNNNDHGFQEEFEEGN 562
+++ EE + E E+G+
Sbjct: 197 KDEKPEEKSKKFDEEEGEEESEGSEDGS 224
>Z81128-3|CAB03401.1| 410|Caenorhabditis elegans Hypothetical
protein T23D8.3 protein.
Length = 410
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 422 ETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFEEGNNRPEIHDER 589
E T+Y ++ + +DE +E YD+Y N+D F EE G R E D+R
Sbjct: 138 ERTTVYRSTRRGEDSEEEEDDDEDDEMYDDY--NDDELFGEE-AVGEIRVERADQR 190
>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
protein C06A5.1 protein.
Length = 1932
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 92 LLTISQKYSCNK*ITMADNLTLDRIDMKQKSTAHLRI----YVGALSDNTTVEEL 244
L++ K + K I MA+N+ LDRID + S +L I +G S T + +
Sbjct: 1190 LVSRMSKETAEKVIKMAENMPLDRIDHQSLSNMYLLIRGYRMIGVQSGETLINRI 1244
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 290 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 409
++ FGFV A A + NG+ +G+ + V AT +
Sbjct: 20 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 59
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 290 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 409
++ FGFV A A + NG+ +G+ + V AT +
Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 290 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 409
++ FGFV A A + NG+ +G+ + V AT +
Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 413 RDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNN 526
RDV+ I P+VP + L+ + + ++E+ Y Y +NN
Sbjct: 432 RDVQLQNIIPQVPLSTLLE--KFDGKTEKEYPTYNDNN 467
>AF026208-2|AAB71269.3| 774|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 40
protein.
Length = 774
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +2
Query: 434 IYPEVPPAVALKDTQME----DESEEAYDNYGNNNDHGFQEEFEE 556
+ P+V P VAL+ Q + ++ Y+N+ N+ +H FQ+ F +
Sbjct: 400 VAPQVAPQVALQTAQQVAPQVQQPQQPYNNFWNHQNH-FQQPFHQ 443
>Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical
protein C01H6.7b protein.
Length = 582
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/75 (22%), Positives = 27/75 (36%)
Frame = +2
Query: 386 PVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFEEGNN 565
P R A + P A + + E E EE Y N ++ + ++E EE +
Sbjct: 15 PTRRARGGNTPSTATPVVPRTSARAAKRVKKEEPEEEEDYKNNNSDPEKSEEDESEESGD 74
Query: 566 RPEIHDERGRGRGRG 610
+ G G G
Sbjct: 75 EMTTPSRKTPGGGAG 89
>Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical
protein C01H6.7 protein.
Length = 636
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/75 (22%), Positives = 27/75 (36%)
Frame = +2
Query: 386 PVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFEEGNN 565
P R A + P A + + E E EE Y N ++ + ++E EE +
Sbjct: 15 PTRRARGGNTPSTATPVVPRTSARAAKRVKKEEPEEEEDYKNNNSDPEKSEEDESEESGD 74
Query: 566 RPEIHDERGRGRGRG 610
+ G G G
Sbjct: 75 EMTTPSRKTPGGGAG 89
>Z69883-2|CAA93740.1| 264|Caenorhabditis elegans Hypothetical
protein C27C12.1 protein.
Length = 264
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 296 NF-GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKD 472
NF G Q + E+ A I KG+ V D +++TV + + PA+
Sbjct: 74 NFNGNEQLSHENEAHSEIPSLLTFQEKGEEDTVEVTRDNYNEIDTVEDFRSIEPALENSP 133
Query: 473 TQMEDESEEAYDNY 514
+ D+S EA +
Sbjct: 134 KILVDDSMEATQTF 147
>Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical
protein T22H6.7 protein.
Length = 195
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 494 EEAYDNYGNNNDHGFQEEFEEGNNRPEIHDERGRGRGRG 610
E A NYGNNN G+ + GNN +D G G
Sbjct: 98 EMATPNYGNNN--GYNNGYNNGNNM-RYNDNNGYNTNNG 133
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 182 STAHLRIYVGALSDNTTVEELYDYFIQ 262
+T+ + I+VG ++DNT EL YFI+
Sbjct: 1738 ATSKILIHVGDINDNTPEFELSSYFIK 1764
>AL033514-28|CAA22089.1| 340|Caenorhabditis elegans Hypothetical
protein Y75B8A.29 protein.
Length = 340
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 464 LKDTQMEDESEEAYDNYGNNNDHGFQEEFEEGNNRPEIHDERGRGRGR 607
++D ++ E Y + D ++EEF++ N P D+R + R R
Sbjct: 73 IEDEYTDNNYNEGYSKMDTDGDLEWEEEFKKLNKDPSKMDKREQERHR 120
>AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein.
Length = 195
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 494 EEAYDNYGNNNDHGFQEEFEEGNNRPEIHDERGRGRGRG 610
E A NYGNNN G+ + GNN +D G G
Sbjct: 98 EMATPNYGNNN--GYNNGYNNGNNM-RYNDNNGYNTNNG 133
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 431 TIYPEVPPAVALKDTQ--MEDESEEAYDNYGNNNDHGFQEEFEEGNNRPEIHDE 586
TI + P + L++ + +EDE +E D+ ND EEFE+ PE D+
Sbjct: 1755 TIQEQRPDVIDLENDEEVLEDEMDEEEDDDSFGND----EEFEDEEEIPEDDDD 1804
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 431 TIYPEVPPAVALKDTQ--MEDESEEAYDNYGNNNDHGFQEEFEEGNNRPEIHDE 586
TI + P + L++ + +EDE +E D+ ND EEFE+ PE D+
Sbjct: 1760 TIQEQRPDVIDLENDEEVLEDEMDEEEDDDSFGND----EEFEDEEEIPEDDDD 1809
>AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical
protein Y105E8A.19 protein.
Length = 722
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 389 VRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFE 553
VR A +K + T + P +PP+ A K + E ++ D N N+ EE +
Sbjct: 338 VRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGNEILIGEELD 392
>AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical
protein Y57A10B.4 protein.
Length = 360
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 183 DFCFISILSNVRLSAIVIYLLQLYFC 106
D+ F+ +L NV LSA ++ + L FC
Sbjct: 285 DWIFVHLLDNVILSAALVISIALLFC 310
>AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA
synthetase (cytoplasmic)protein.
Length = 722
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 389 VRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFE 553
VR A +K + T + P +PP+ A K + E ++ D N N+ EE +
Sbjct: 338 VRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGNEILIGEELD 392
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,665,438
Number of Sequences: 27780
Number of extensions: 302823
Number of successful extensions: 1151
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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