Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16f08
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 32 0.062
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 29 0.43
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 29 0.57
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.3
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 28 1.3
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.3
SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.0
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 26 4.0
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 5.3
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 5.3
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 5.3
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.1
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 25 9.3
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 25 9.3
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c... 25 9.3
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 9.3
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 32.3 bits (70), Expect = 0.062
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 313 FGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKY 492
FGRR P ++AVF+ I + A + + RF + T ++ A+
Sbjct: 137 FGRRRPMIIAVFIFCIFHIAVATAKDIQTVMICRFFCGFFGSSPITTVAGSFSDMFSART 196
Query: 493 RETVGIIYQ-IPFNLGHLSLPLFGYYL 570
R V +Y I FN G L P+ G ++
Sbjct: 197 RGLVIAVYSAIIFN-GPLMSPIVGGFI 222
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 0.43
Identities = 24/76 (31%), Positives = 33/76 (43%)
Frame = +1
Query: 316 GRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYR 495
GR+ L A + +I V A S N M RFI+ G T + + EL A+ R
Sbjct: 148 GRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLR 207
Query: 496 ETVGIIYQIPFNLGHL 543
+ IIY + G L
Sbjct: 208 GRLVIIYVVFITGGQL 223
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 415 FILAVATGGTMVTSFVLTMELIGAKYRETVGIIYQIPFNLGHLSLP 552
++L V+ G +V +++ G + TVG+IY I + +G+L P
Sbjct: 388 YLLMVSPGAMIVMFAIISSNASGYTKKVTVGVIYLIGYCVGNLIGP 433
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/87 (22%), Positives = 35/87 (40%)
Frame = +1
Query: 310 RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAK 489
+FGRR +L+ + + + A SVN MF RF + + +L K
Sbjct: 104 QFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGLFGSVGLSNGSGSLADLFEKK 163
Query: 490 YRETVGIIYQIPFNLGHLSLPLFGYYL 570
R +IY ++G P+ ++
Sbjct: 164 DRGKYMVIYFTVLSIGPGIAPIISGFI 190
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/87 (22%), Positives = 35/87 (40%)
Frame = +1
Query: 310 RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAK 489
+FGRR +L+ + + + A SVN MF RF + + +L K
Sbjct: 104 QFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGLFGSVGLSNGSGSLADLFEKK 163
Query: 490 YRETVGIIYQIPFNLGHLSLPLFGYYL 570
R +IY ++G P+ ++
Sbjct: 164 DRGKYMVIYFTVLSIGPGIAPIISGFI 190
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/87 (22%), Positives = 35/87 (40%)
Frame = +1
Query: 310 RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAK 489
+FGRR +L+ + + + A SVN MF RF + + +L K
Sbjct: 104 QFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGLFGSVGLSNGSGSLADLFEKK 163
Query: 490 YRETVGIIYQIPFNLGHLSLPLFGYYL 570
R +IY ++G P+ ++
Sbjct: 164 DRGKYMVIYFTVLSIGPGIAPIISGFI 190
>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 116
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 471 HCEYEACNHSPSSGHGKYEAKCCK 400
+C+Y C + S H K +A CK
Sbjct: 11 YCKYTCCGYVGSLDHDKQDAHVCK 34
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 419 YLPWPLEGLWLQASYSQWN 475
YLP P+ W Q + QWN
Sbjct: 543 YLPSPVPRKWRQLRFQQWN 561
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -2
Query: 510 DSNSLSVFSAD*FHCEYEACNHSPSSGHGKYEAKCCKHVPVHRICSCYS 364
D N L F+ E + +HS + H K + K K +PV Y+
Sbjct: 807 DENDLLPFNETDDEEEIQTVDHSETHSHKKKKRKAIKDLPVFADAESYA 855
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 478 IGAKYRETVGIIYQIPFNLGHLSLPLFGYYLRNWSNFQLAISLPSVLF 621
+ +K+R+ + + PF L +PL +YLR ++ + + LF
Sbjct: 1186 LASKFRQEMQALAHNPFGLTMAEVPLARFYLRKMEGAEILLVDETNLF 1233
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 18 SLLVFVCCVPFRASPASVRPL*PTVYDIRQPRP 116
S++ +C RA P +RPL T +D+R RP
Sbjct: 510 SMIPIICICNDRAHP-KLRPLDRTTFDLRFRRP 541
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 7.1
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +1
Query: 133 CISISARNTSVSNDSPFRRKRTQFALPLFMLSL*CGEYLCCSDDNHNIS 279
CI I N S SP +K+T L + L C YLC +++NH IS
Sbjct: 1021 CIGI---NQSSEFLSPIWKKKTYVCL-CTTIGL-CNIYLCFANENHIIS 1064
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 313 FGRRTPFLVAVFLQLISGV--TTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGA 486
FGR+ +A + ++ + TA+ + W+M RF++ G + + E+ +
Sbjct: 154 FGRKPVIAIASIIIIVGSIVQVTAHHL-WHMIVG-RFVIGWGVGIASLIIPLYLSEIAPS 211
Query: 487 KYRETVGIIYQIPFNLGHL 543
K R + IIY + G +
Sbjct: 212 KIRGRLVIIYVLLITAGQV 230
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 91 TVGYRGRTLAGEARKGTQHTNTRSEA 14
TVG+ G G++ TQ T TRSEA
Sbjct: 65 TVGFIGFPSVGKSTLMTQLTGTRSEA 90
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -3
Query: 251 HRYSPHYNDNINKGKANCVRLRLKGESFETEVFLALIEMQLWKM 120
H++ P+YNDN++ K L + E +V+ + ++K+
Sbjct: 59 HKHGPYYNDNVDDLKRYTFMGLLTLPTSEHDVYFNATRVLVYKL 102
>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 230 YSVVNTCVVRTITTIFRRSNYRQISTEDLVAE 325
YS++ TC+V + ++ R + + DL+ E
Sbjct: 88 YSLILTCLVAILLSVLWRIQFAALRMHDLIEE 119
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +1
Query: 529 NLGHLSLPLFGYYLRNWSNFQLAISLPSV 615
+L H+ ++ YY +W N + +LP++
Sbjct: 53 DLAHIGGLVYAYYKYDWKNAYIYATLPTI 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,680
Number of Sequences: 5004
Number of extensions: 56122
Number of successful extensions: 170
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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