Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16f08
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0896 + 22373348-22374946 70 1e-12
07_03_0899 + 22421038-22422642 69 3e-12
07_03_0898 - 22403337-22404950 67 1e-11
01_03_0126 + 12741397-12743022 63 2e-10
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 39 0.004
10_08_0925 + 21604871-21605021,21605562-21605881,21606899-216078... 36 0.028
03_01_0010 - 94931-96034,96117-96442,97154-97283 34 0.084
11_01_0208 - 1628020-1628117,1628282-1628325,1628790-1628878,162... 34 0.11
12_01_0209 - 1583401-1583498,1583879-1583922,1584285-1584373,158... 33 0.15
01_07_0304 - 42628086-42628104,42628828-42630263 33 0.26
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 31 0.78
11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846 31 1.0
02_04_0601 + 24255264-24255420,24256228-24256234,24256803-242568... 31 1.0
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 30 1.4
09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607... 30 1.8
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 30 1.8
11_01_0211 - 1660249-1660352,1660504-1660547,1660893-1660934,166... 29 2.4
01_06_1653 + 38922265-38923086 29 2.4
05_01_0165 - 1139271-1139417,1139549-1139777,1139889-1139992,114... 29 3.2
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 29 4.2
07_03_1045 + 23528768-23528879,23528979-23530399 29 4.2
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 28 5.5
03_02_0611 + 9842550-9843035,9844313-9844416,9844586-9844814,984... 28 5.5
01_06_0727 - 31517592-31518600,31519999-31520225 28 5.5
01_06_0088 + 26305326-26306372 28 5.5
03_04_0206 - 18493178-18495310 28 7.3
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537... 28 7.3
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 27 9.7
>07_03_0896 + 22373348-22374946
Length = 532
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = +1
Query: 316 GRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYR 495
GRR LV++ ++GV TA+S N + + LRF+ + VL+ EL+G ++R
Sbjct: 145 GRRKMLLVSLASMSVAGVLTAFSPNVWAYAALRFVCGFGRSMVGTCALVLSTELVGKRWR 204
Query: 496 ETVGIIYQIPFNLGHLSLPLFGYYLR--NWSNFQLAISLPSVLF-LSYYFLL 642
+TV + + F +G LSLP Y R +W + L SLPS+ + + YFL+
Sbjct: 205 DTVSVAGFVCFTVGFLSLPALAYTFREASWRSMYLWTSLPSLGYAILLYFLV 256
>07_03_0899 + 22421038-22422642
Length = 534
Score = 68.9 bits (161), Expect = 3e-12
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = +1
Query: 316 GRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYR 495
GRR ++++ ++GV T +S N +++ LRF+ ++ VL+ EL+G +R
Sbjct: 154 GRRKMLVLSLVTMSVAGVLTVFSPNVWVYAALRFVCGFCRSTAGTSAMVLSTELVGKWWR 213
Query: 496 ETVGIIYQIPFNLGHLSLPLFGYYLR--NWSNFQLAISLPSVLF-LSYYFLL 642
TV + + F++G +SLP Y LR +W N + SLPS+ + + YFL+
Sbjct: 214 NTVSVAAFVFFSVGFMSLPALAYTLREASWRNMYVWTSLPSLCYAVLLYFLV 265
>07_03_0898 - 22403337-22404950
Length = 537
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = +1
Query: 316 GRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYR 495
GRR ++++ ++GV TA+S N +++ LRF+ ++ VL+ EL+G +R
Sbjct: 146 GRRKMLVLSLATMSVAGVLTAFSPNVWVYAALRFVSGFGRSMVGTSAMVLSTELVGKWWR 205
Query: 496 ETVGIIYQIPFNLGHLSLPLFGYYLR--NWSNFQLAISLPSVLF-LSYYFLL 642
TV + + F++G +SLP Y LR +W + SLPS+ + + YFL+
Sbjct: 206 NTVSVAGFVLFSVGFMSLPALAYTLREASWRTMYVWTSLPSLCYAVLLYFLV 257
>01_03_0126 + 12741397-12743022
Length = 541
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Frame = +1
Query: 316 GRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYR 495
GRR L+++ ++ TA+S N ++++ LRF+ ++ VL+ EL G ++R
Sbjct: 152 GRRKMLLLSLVTMSVAAALTAFSPNVWVYSALRFVSGFGRSMVGTSAMVLSTELDGKRWR 211
Query: 496 ETVGIIYQIPFNLGHLSLPLFGYYLR--NWSNFQLAISLPSVLFLSYYFLL 642
TV + F++G +SLP Y R +W N + SLPS+ + +LL
Sbjct: 212 NTVSAAGFVFFSVGFVSLPALAYTFREASWRNMYVWTSLPSLCYAVLLYLL 262
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +1
Query: 310 RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMV-TSFVLTMELIGA 486
++GRR L + G +A+S N+ LRF++ + GG V TS+ L E + A
Sbjct: 277 KYGRRICLLFSTLFASGMGFLSAFSPNYSCLLALRFLVGIGVGGAHVFTSWFL--EFVPA 334
Query: 487 KYRETVGIIYQIPFNLGHL---SLPLFGYYLRNWSNFQLAISLPSVLFLSYYFLLP 645
+ R T +I+ + +G + SL + +W +LP L + ++ P
Sbjct: 335 QNRGTWMVIFSCFWTIGTILEASLAWVVISVLSWRWLLALTALPCSLLIPFFGTTP 390
>10_08_0925 +
21604871-21605021,21605562-21605881,21606899-21607897,
21608085-21608126,21608190-21608249,21608915-21608959
Length = 538
Score = 35.9 bits (79), Expect = 0.028
Identities = 22/91 (24%), Positives = 42/91 (46%)
Frame = +1
Query: 292 SSNFN*RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTM 471
+S+ R+GRRT L+ + + V +VN +M R +L + G T + +
Sbjct: 105 ASSVTRRYGRRTSMLIGGTVFIAGSVFGGAAVNVFMLLINRILLGIGLGFTNQSIPLYLS 164
Query: 472 ELIGAKYRETVGIIYQIPFNLGHLSLPLFGY 564
E+ +YR + +++ +LG L + Y
Sbjct: 165 EMAPPRYRGAINNGFELCISLGILFANVLNY 195
>03_01_0010 - 94931-96034,96117-96442,97154-97283
Length = 519
Score = 34.3 bits (75), Expect = 0.084
Identities = 22/92 (23%), Positives = 42/92 (45%)
Frame = +1
Query: 289 LSSNFN*RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLT 468
++S+ RFGRR L+ + + V +VN YM R +L + G T + +
Sbjct: 99 VASSVTRRFGRRASILIGGSVFVAGSVFGGAAVNIYMLILNRVLLGIGLGFTNQSIPLYL 158
Query: 469 MELIGAKYRETVGIIYQIPFNLGHLSLPLFGY 564
E+ ++R + +++ ++G L L Y
Sbjct: 159 SEMAPPQHRGAINNGFELCISIGILIANLINY 190
>11_01_0208 -
1628020-1628117,1628282-1628325,1628790-1628878,
1628986-1629030,1629397-1629504,1629650-1629735,
1629870-1629957,1630275-1630445,1630718-1630793,
1630877-1630926,1631035-1631097,1631201-1631254,
1631398-1631500,1631626-1631728,1632038-1632098,
1632186-1632226,1632375-1632453
Length = 452
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/87 (24%), Positives = 40/87 (45%)
Frame = +1
Query: 310 RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAK 489
R GR+ + ++F ++ SV ++M T RF+L A G + ++E+ A+
Sbjct: 81 RIGRKPVIIFSIFAVIVLNTLFGLSVKYWMAVTTRFLLG-ALNGLLAPIKAYSIEVCRAE 139
Query: 490 YRETVGIIYQIPFNLGHLSLPLFGYYL 570
++ I + +G + P G YL
Sbjct: 140 HQALGLSIVSTAWGIGLVVGPAIGGYL 166
>12_01_0209 -
1583401-1583498,1583879-1583922,1584285-1584373,
1584911-1585018,1585158-1585243,1585385-1585472,
1585970-1586140,1586379-1586454,1586534-1586583,
1586692-1586754,1586839-1586892,1587038-1587140,
1587265-1587367,1587479-1587569,1587629-1587669,
1587801-1587879
Length = 447
Score = 33.5 bits (73), Expect = 0.15
Identities = 26/112 (23%), Positives = 48/112 (42%)
Frame = +1
Query: 310 RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAK 489
R GR+ + ++F ++ SV ++M T RF+L A G + ++E+ A+
Sbjct: 91 RIGRKPVIIFSIFAVIVLNTLFGLSVKYWMAVTTRFLLG-ALNGLLAPIKAYSIEVCRAE 149
Query: 490 YRETVGIIYQIPFNLGHLSLPLFGYYLRNWSNFQLAISLPSVLFLSYYFLLP 645
++ I + +G + P G YL I +F + +LLP
Sbjct: 150 HQPLGLSIVSTAWGIGLVVGPATGGYLAQPVKQYPHIFHEKSIFGRFPYLLP 201
>01_07_0304 - 42628086-42628104,42628828-42630263
Length = 484
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +1
Query: 316 GRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYR 495
GRR ++A + + + SVN+ M RF+ + G + + V T E+ A R
Sbjct: 34 GRRLTIILAAVIFFVGAIMMGLSVNYPMLMAGRFVAGIGVGYAFMIAPVYTAEVSPASSR 93
Query: 496 ETVGIIYQIPFNLGHL 543
+ ++ N G L
Sbjct: 94 GFLTSFPEVFINFGIL 109
>02_05_0497 - 29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 471 HCEYEACNHSPSSGHGKYEAKCCKHVPVHR 382
H A P GHG Y A+ C PVHR
Sbjct: 995 HSAVRALGFLPEEGHGVYVARWCHGSPVHR 1024
>11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846
Length = 173
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 102 RQPRPVHFPKLHFDQCEEYLGLERLALQT*TYTVCLAF 215
RQPRP+ L+ D+ E L L+RLA+++ T ++F
Sbjct: 9 RQPRPLTCGALNHDRRAELLNLDRLAMRSTTAIAVVSF 46
>02_04_0601 +
24255264-24255420,24256228-24256234,24256803-24256851,
24256954-24257087,24257464-24257594,24257679-24257723,
24257814-24257911,24258340-24258396,24258865-24258939
Length = 250
Score = 30.7 bits (66), Expect = 1.0
Identities = 26/84 (30%), Positives = 40/84 (47%)
Frame = +1
Query: 319 RRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYRE 498
R TP +A L +++ + + VN M+TTLR V F +TME AK +
Sbjct: 59 RTTPLSLAYLLYMLASMESVRGVNVPMYTTLRRTTVV---------FTMTMEYFLAKQKH 109
Query: 499 TVGIIYQIPFNLGHLSLPLFGYYL 570
T II G ++L +FG ++
Sbjct: 110 TPPII-------GSVALIVFGAFI 126
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +1
Query: 316 GRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYR 495
GRR ++A + + + + RF+ +V G ++V + V E+ A R
Sbjct: 96 GRRGTLVLANAFLMAGALAMSLGATYAALMAARFVTSVGVGFSLVVAPVYNAEISPASAR 155
Query: 496 ETVGIIYQIPFNLGHL 543
V ++++ N+G L
Sbjct: 156 GVVSTLFEMFVNVGIL 171
>09_04_0696 -
19559227-19559622,19559710-19559862,19559957-19560784,
19561727-19561842,19562286-19562319
Length = 508
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 113 PCAFSKVAFRSVRGIPRSRTTRPSDVNVHSLPCLYLCCH 229
PC ++ + VRG R R N+HSL Y H
Sbjct: 241 PCVLQRLTYVEVRGCSRLRVIENKAPNLHSLHIFYQAYH 279
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 29.9 bits (64), Expect = 1.8
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 6/125 (4%)
Frame = +1
Query: 289 LSSNFN*RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLT 468
LS G+R VA L IS + + N YM R I +G + + +
Sbjct: 108 LSGMITNSIGKRPLLSVAAILYSISALIMFQASNEYMLLLARLIYGFGSGLVVTYAPLYI 167
Query: 469 MELIGAKYRETVGIIYQIPFNLGHLSLPLFGYYLR-----NWSNFQLAISLPSVLFLSY- 630
E R + + Q +LG L + + + NW ++S+PS +FL
Sbjct: 168 SETAPTNMRGLLNTLPQFNGSLGMLLSYIMVFLMSLTLNPNWRIMLGSLSIPSFVFLLLC 227
Query: 631 YFLLP 645
F LP
Sbjct: 228 IFYLP 232
>11_01_0211 -
1660249-1660352,1660504-1660547,1660893-1660934,
1661010-1661098,1661181-1661225,1661501-1661545,
1661574-1661681,1661765-1661850,1662253-1662340,
1662884-1663084,1663491-1663566,1663652-1663701,
1663783-1663845,1663924-1663977,1664093-1664195,
1664328-1664430,1664516-1664576,1664872-1664912,
1666605-1666761
Length = 519
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/112 (20%), Positives = 43/112 (38%)
Frame = +1
Query: 310 RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAK 489
R GR+ + +F +I S ++M RF+L A G + +E+ +
Sbjct: 107 RIGRKPVVVFGIFAVVIFNTLFGLSFTYWMAIATRFLLG-ALNGLLGPIKAYAIEVCRPE 165
Query: 490 YRETVGIIYQIPFNLGHLSLPLFGYYLRNWSNFQLAISLPSVLFLSYYFLLP 645
+ + + +G + P G YL + + P LF + + LP
Sbjct: 166 HEALALSLVSTAWGIGLIIGPAIGGYLSQPAEKFPNVFSPDSLFARFPYFLP 217
>01_06_1653 + 38922265-38923086
Length = 273
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 340 AVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGA 486
A F+ +SG+ YS+ W + + A+ G +V FVL+++ G+
Sbjct: 181 ASFIGHLSGIIVGYSIAWGLVHGMNNYWAITMFGWIVLVFVLSLKRTGS 229
>05_01_0165 -
1139271-1139417,1139549-1139777,1139889-1139992,
1140097-1140639
Length = 340
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/108 (24%), Positives = 44/108 (40%)
Frame = +1
Query: 118 CIFQSCISISARNTSVSNDSPFRRKRTQFALPLFMLSL*CGEYLCCSDDNHNISEIELSS 297
C +C +S + S +P + + L ++L G C S N+S L
Sbjct: 77 CHMSACALLSYAAAAASAAAPRAARPRRSRGQLARVAL-LGAVFCASVVAGNVSLRYLPV 135
Query: 298 NFN*RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGG 441
+FN G TPF AV ++ A + + + ++ +ATGG
Sbjct: 136 SFNQAVGATTPFFTAVLAYAVAARREACATYAALIPVVAGVV-IATGG 182
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 113 PCAFSKVAFRSVRGIPRSRTTRPSDVNVHSLPCLYLCCH 229
PC ++ + VRG R R N+HSL Y H
Sbjct: 241 PCVLQRLTYVEVRGCSRLRVIENKAPNLHSLHIFYQPYH 279
>07_03_1045 + 23528768-23528879,23528979-23530399
Length = 510
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +1
Query: 316 GRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYR 495
GRR + A + ++VN+ M RF+ + G ++ + V T E+ A R
Sbjct: 86 GRRYTIVFAAVIFFAGAFLMGFAVNYAMLMFGRFVAGIGVGYALMIAPVYTAEVSPASAR 145
Query: 496 ETVGIIYQIPFNLGHL 543
+ ++ N G L
Sbjct: 146 GFLTSFPEVFINFGIL 161
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/85 (23%), Positives = 37/85 (43%)
Frame = +1
Query: 316 GRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLTMELIGAKYR 495
GRR ++A L + + + ++ RF+ +V G +V + V +E+ A R
Sbjct: 160 GRRGTLVLANALLMAGALAMSLGGSYAALMAARFVTSVGVGFAVVVAPVYAVEISPASSR 219
Query: 496 ETVGIIYQIPFNLGHLSLPLFGYYL 570
+ + +I N G L + Y L
Sbjct: 220 GVLSSLPEIFINAGILLSYVSNYAL 244
>03_02_0611 +
9842550-9843035,9844313-9844416,9844586-9844814,
9846121-9846270
Length = 322
Score = 28.3 bits (60), Expect = 5.5
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Frame = +1
Query: 115 LCIFQSCISISARNTSVSNDSPFR--RKRTQFALPLFMLSL*CGEYLCCSDDNHNISEIE 288
+C +C +S + P + R R Q A + LSL C S + N+S
Sbjct: 59 MCHMSACALLSYAAIAWLRVVPMQLVRSRVQLA-KIAALSL----VFCGSVVSGNVSLRY 113
Query: 289 LSSNFN*RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILA---VATGG 441
L +FN G TPF AVF ++ T +W + TL ++ +A+GG
Sbjct: 114 LPVSFNQAVGATTPFFTAVFAYIM----TVKRESWVTYLTLVPVVTGVMIASGG 163
>01_06_0727 - 31517592-31518600,31519999-31520225
Length = 411
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 215 YLCCHYSVVNTCVVRTITTIFRRSNYRQ 298
Y+CCHY+ N T TT S+ +Q
Sbjct: 314 YICCHYNAPNCSTTTTTTTTDGASDEQQ 341
>01_06_0088 + 26305326-26306372
Length = 348
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 110 PPCA-FSKVAFRSVR-GIPRSRTTRPSDVNVHSLPCLYLCCHYSVVNT 247
P CA +++ A R +R G+PR P+ LPCL+ H+ + +T
Sbjct: 16 PACAWYARSACRRLRPGLPRLAALAPTFPVFVYLPCLFNSLHFRLFST 63
>03_04_0206 - 18493178-18495310
Length = 710
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +3
Query: 372 NCIFGELVHVYNTSLHTCRGHWRDY--GYK 455
N + E++H+++ +LH RG++ D+ GY+
Sbjct: 364 NTVCNEIIHLHDKNLHVYRGNFDDFESGYE 393
>02_05_0356 +
28252154-28252897,28253171-28253377,28253473-28253710,
28254853-28255220
Length = 518
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 313 FGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLR 414
FG R PFL + + L GV YS W + +R
Sbjct: 484 FGSRFPFLPLIMVSLYCGVGMMYSWMWQLAWIVR 517
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/82 (19%), Positives = 38/82 (46%)
Frame = +1
Query: 289 LSSNFN*RFGRRTPFLVAVFLQLISGVTTAYSVNWYMFTTLRFILAVATGGTMVTSFVLT 468
+ S+ N FG+ P L+ F+ I+ + + T + I+ + GT++ +++
Sbjct: 322 IQSHLNKDFGKN-PLLLLEFVMFITSIILIDEEKKMLHTKVDLIVTLGGDGTVLWNWLTA 380
Query: 469 MELIGAKYRETVGIIYQIPFNL 534
+YR+ + + PF++
Sbjct: 381 EMEASEQYRDCLDNVLNGPFSI 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,352,955
Number of Sequences: 37544
Number of extensions: 354492
Number of successful extensions: 855
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -