Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16f07
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    29   0.99 
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.0  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   4.0  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   4.0  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    26   7.0  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    26   7.0  

>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 716 TLLASILKVTRIVSPSTNPTSDSHHLNEQP 627
           T L++I K+T   SPS  P  DSH L++ P
Sbjct: 113 TTLSAIDKLTNDSSPSKPPHPDSHILDDDP 142


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 443 TRCPKCTLTAHTCA-PKNTRSWA 508
           TRCP+C LTA+  A P   +SWA
Sbjct: 58  TRCPQC-LTAYRIAKPPKEKSWA 79


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/94 (21%), Positives = 39/94 (41%)
 Frame = +1

Query: 10  YNMAVLTAVDLTNASRYAIHMHRLEFISRWRTRFPHILIDYTLRPASSDDDYYVPPKLAD 189
           Y++A + + DL + +RY     +LEF   +       L  +++     D D+ V P   +
Sbjct: 353 YSLARMNSSDLFSKARYVRRAIQLEFNKNF------FLPSFSVDDPRGDIDFIVTPSFFN 406

Query: 190 RALAVKLTFSKRGCESMSCYPFHETGVVSNTTPF 291
            +  ++   S          P +  G+ S + PF
Sbjct: 407 SSQPIETPSSYSHLSDTMLVPANMAGIPSVSIPF 440


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 427 RCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAFNVRPDPDPLFPERFKGEFNEAY 594
           RCI      K Y +S     ++     VDD+P  +   + +PL P   K EF+ ++
Sbjct: 273 RCIRCLQFIKPYISSLDATEDDVDFTEVDDIPEDDELEEEEPLLPS--KEEFDASF 326


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 740 SKLRNSLKTLLASILKVTRIVSPSTNPTSDSHHLN 636
           SK+RNS  T   + + +  ++SP   P   +HH N
Sbjct: 263 SKVRNSNSTKRRNFISLISMISP--RPNLSTHHFN 295


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 740 SKLRN---SLKTLLASIL-KVTRIVSPSTNPTSDSHHLNEQPPLNRFL 609
           S LRN   +L+   AS+L KV    + S+  +S+S      PPL RFL
Sbjct: 321 SNLRNLGLALEKSYASLLSKVANHTAKSSEDSSNSVEFVGDPPLERFL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,551
Number of Sequences: 5004
Number of extensions: 68898
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)