Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16f07
         (780 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018698-1|AAH18698.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA pro...    34   0.66 
BC018665-1|AAH18665.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA pro...    34   0.66 
BC008719-1|AAH08719.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA pro...    34   0.66 
AJ131186-1|CAB51857.1|  504|Homo sapiens nuclear matrix protein ...    34   0.66 
AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.       31   6.1  
AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo ...    31   6.1  
U02714-1|AAA17370.1|  255|Homo sapiens folate binding protein pr...    30   8.1  
AF091073-1|AAC72942.1|  103|Homo sapiens ABC transporter protein.      30   8.1  

>BC018698-1|AAH18698.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA
           processing factor 19 homolog (S. cerevisiae) protein.
          Length = 504

 Score = 33.9 bits (74), Expect = 0.66
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 115 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 282
           H   DY L  +SSDD Y+    +    +  K+T    GC S++C  FH  G++  T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367


>BC018665-1|AAH18665.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA
           processing factor 19 homolog (S. cerevisiae) protein.
          Length = 504

 Score = 33.9 bits (74), Expect = 0.66
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 115 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 282
           H   DY L  +SSDD Y+    +    +  K+T    GC S++C  FH  G++  T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367


>BC008719-1|AAH08719.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA
           processing factor 19 homolog (S. cerevisiae) protein.
          Length = 504

 Score = 33.9 bits (74), Expect = 0.66
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 115 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 282
           H   DY L  +SSDD Y+    +    +  K+T    GC S++C  FH  G++  T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367


>AJ131186-1|CAB51857.1|  504|Homo sapiens nuclear matrix protein
           NMP200 protein.
          Length = 504

 Score = 33.9 bits (74), Expect = 0.66
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 115 HILIDYTLRPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNT 282
           H   DY L  +SSDD Y+    +    +  K+T    GC S++C  FH  G++  T
Sbjct: 315 HATGDYLL--SSSDDQYWAFSDIQTGRVLTKVTDETSGC-SLTCAQFHPDGLIFGT 367


>AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.
          Length = 4186

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
 Frame = +2

Query: 359 RRPCVKAPKIKFSLPSLDTRPTT--DASWWTRCPKCTLTAHTCAPKNTRSWAWTMCRLLT 532
           RR C+  P    S P LD+ P T   A      P+ + TA   APK  RS     CR L 
Sbjct: 301 RRNCL--PGASGSGPELDSAPRTARTAPASGSAPRESRTAPEPAPKRMRSRGLFRCRFLP 358

Query: 533 FGPIP----IPCFPNALKANS 583
             P P    +P  P A K  S
Sbjct: 359 QRPGPRPPGLPARPEARKVTS 379


>AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo 1
           protein.
          Length = 3312

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
 Frame = +2

Query: 359 RRPCVKAPKIKFSLPSLDTRPTT--DASWWTRCPKCTLTAHTCAPKNTRSWAWTMCRLLT 532
           RR C+  P    S P LD+ P T   A      P+ + TA   APK  RS     CR L 
Sbjct: 231 RRNCL--PGASGSGPELDSAPRTARTAPASGSAPRESRTAPEPAPKRMRSRGLFRCRFLP 288

Query: 533 FGPIP----IPCFPNALKANS 583
             P P    +P  P A K  S
Sbjct: 289 QRPGPRPPGLPARPEARKVTS 309


>U02714-1|AAA17370.1|  255|Homo sapiens folate binding protein
           protein.
          Length = 255

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 437 WWTRCPKCTLTAHTCAPKNTRSWAWT 514
           WW  C    LT+HTC     R W WT
Sbjct: 136 WWEDC----LTSHTCKSNWHRGWDWT 157


>AF091073-1|AAC72942.1|  103|Homo sapiens ABC transporter protein.
          Length = 103

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = +2

Query: 413 TRPTTDASWWTRCPKCTLTAHTCAPK---NTRSWAWTM 517
           TR T+  SWW R P       TC P      RS  W +
Sbjct: 31  TRSTSSPSWWMRSPSSPRVPTTCEPSTWVRVRSSIWEL 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,948,135
Number of Sequences: 237096
Number of extensions: 2581132
Number of successful extensions: 5759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5740
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)