Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16f07
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 20/84 (23%), Positives = 31/84 (36%)
 Frame = +1

Query: 139 RPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETR 318
           RPAS     YV P    + L  K  F +    + + +     G  S+ +  ++ Q  E  
Sbjct: 110 RPASPG---YVQPPTKHQKLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEEE 166

Query: 319 VGYAQPACYHLDRAAAMREGAENK 390
               +    +LD      E  ENK
Sbjct: 167 QTINRKNSDYLDNQEVSMENTENK 190


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 667 VLGDTILVTFKMLANNVFSELRNFDYRAPSSI 762
           VLG   ++TF  LA+ V + L    Y   S I
Sbjct: 265 VLGTNTILTFMTLASKVENSLPKVSYIKASEI 296


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 491 SSVRKYGLLKYILDSESTKMHLLSGV 414
           SSV+ Y L K+ L     K HL S V
Sbjct: 582 SSVQNYSLAKHQLKEAFVKAHLGSWV 607



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 125 ISICGNLVR--HLEINSRRCIC 66
           +S+ G  +   H E+ +RRC+C
Sbjct: 307 LSVSGGALNDCHAEVVARRCLC 328


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 667 VLGDTILVTFKMLANNVFSELRNFDYRAPSSILXP 771
           VLG+ +  +      NV+ +L NF + A S I  P
Sbjct: 344 VLGNIMEASILSPNQNVYGDLHNFGHVAISYIHDP 378


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 132 VVDQYMRKPSAPSRNK 85
           +VD Y R PS   R K
Sbjct: 115 IVDDYQRNPSVVGRKK 130


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 406 TRQTELYFRRLHAWPPPCPNGST 338
           T   + + R++HA  PP P   T
Sbjct: 235 TSMAKSFVRKVHATKPPKPQTKT 257


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 322 GYAQPACYHLDRAAAMREGAENKVQSAE 405
           GY     YHL +A   +   E K++  E
Sbjct: 486 GYGAGIVYHLSKAELDKMDKEKKLEDLE 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,501
Number of Sequences: 438
Number of extensions: 4427
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)