Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e23
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   0.48 
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    23   4.5  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    23   4.5  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    23   4.5  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    23   4.5  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    23   4.5  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   7.8  

>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 0.48
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 87  FPKRIFMSISTDSCHSCYICQRRLCVRPFRSCVVNE 194
           +PK  F+     + H C I Q R   R  R+C+ NE
Sbjct: 290 YPKNTFL-FEVMARHCCEIGQSRFGARAIRACLENE 324


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 245 FLWIVFILSAIQYFVSVLIDDARTKGAHTQTTLTYITRVT 126
           F+W   IL  + + VSV++      G+    TL+Y+   T
Sbjct: 459 FIWYAQILWYLVFIVSVILSIYFQLGSTYWVTLSYLCTFT 498


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 122 QLSLLLYMSTSFVCAPLSFLR 184
           +L++  +  T+F+CA L+FLR
Sbjct: 441 KLNIRTFYLTAFLCALLNFLR 461


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 248 FFLWIVFILSAIQYFVSVL 192
           FF+WI F+++ +    S+L
Sbjct: 100 FFMWITFLIAIVGITTSIL 118


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 114 STDSCHSCYICQ 149
           ST++CH+C +C+
Sbjct: 373 STNTCHTCPVCR 384


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 155 FVCAPLSFLRR-Q*VRTQNIVSLI 223
           FV  PLSFL+R   +R  +++SLI
Sbjct: 148 FVLTPLSFLKRLDSLRHTSVISLI 171


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 132 SCYICQRRLCVRPFRSCVVNEYGHKILY 215
           +C+     L V P ++ + N Y  KIL+
Sbjct: 534 TCFCSSIGLTVSPTKTKITNSYTDKILF 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 937,854
Number of Sequences: 5004
Number of extensions: 15457
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)