Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e23
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    27   1.6  
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060...    27   2.1  
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631...    25   6.4  

>11_06_0557 - 24955837-24956214,24957225-24957395,24957576-24957635,
            24958419-24958623,24958710-24958953,24959103-24959394,
            24959734-24960828,24960915-24961409,24961665-24961823,
            24961893-24962387
          Length = 1197

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +1

Query: 28   DIVNY*NVSCV*GPVLE--LYNFLNASLCQYQLTAVTLVIYVNVVCVCAPFVLASSMSTD 201
            D+V+  + SC+    +E  +  FL   LC+  LT     + V +VC C+  V A      
Sbjct: 816  DVVDMEDFSCMGKKSMEAAVVLFLLQKLCE-GLTNAAGRLNVGIVCFCSNQVNAIITQLG 874

Query: 202  TKYCIADRIN 231
             KY   DR+N
Sbjct: 875  RKYQNHDRVN 884


>11_06_0562 +
           25003246-25003746,25004975-25005214,25005576-25006097,
           25006184-25007248,25007350-25007656,25007761-25008001,
           25008104-25008302,25008771-25008852,25008959-25009209,
           25010061-25010219,25010220-25010603
          Length = 1316

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 130 TLVIYVNVVCVCAPFVLASSMSTDTKYCIADRIN 231
           T VI V V+C+C  +V     S   KY   ++IN
Sbjct: 883 TEVIDVGVLCLCGSYVGGIKSSLGKKYATHNKIN 916


>03_06_0500 -
           34361139-34362006,34362295-34362818,34362908-34363125,
           34363259-34363406
          Length = 585

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 73  LELYNFLNASLCQYQLTAVTLVIYV--NVVCVCAPFVLASSMSTDTKYCIA 219
           +  +N+ N +LC   L  VT+++Y+   V    A  VLA+ M+      +A
Sbjct: 187 MSYFNWWNCALCAGVLLGVTVIVYLQEKVGWGAAAVVLAAVMAASLAVFLA 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,282,773
Number of Sequences: 37544
Number of extensions: 82724
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)