Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e23
         (250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099919-8|AAC68800.1|  488|Caenorhabditis elegans Hypothetical ...    30   0.25 
AF067942-10|AAG45578.2|  358|Caenorhabditis elegans Hypothetical...    28   1.0  
AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    26   3.1  
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    26   4.1  
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella...    26   4.1  
Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U39667-2|AAQ91910.1|  426|Caenorhabditis elegans Xo lethal prote...    25   7.1  
U21317-2|AAA62531.3|  729|Caenorhabditis elegans Hypothetical pr...    25   7.1  
L35129-1|AAA67047.1|  426|Caenorhabditis elegans xol-1 protein.        25   7.1  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    25   7.1  
U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF099919-8|AAC68800.1|  488|Caenorhabditis elegans Hypothetical
           protein F40G9.5 protein.
          Length = 488

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 142 YVNVVCVCAPFVLASSMSTDTKYCIADRINTI 237
           Y + +    PF + S +  D KYC A ++NTI
Sbjct: 334 YRSHLVAVTPFGIGSYLHADPKYCTAQKLNTI 365


>AF067942-10|AAG45578.2|  358|Caenorhabditis elegans Hypothetical
           protein ZK6.1 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 114 STDSCHSCYICQRRLCVR--PFRSCVVNEY 197
           S  SC++C I  RRL  R  P + C + EY
Sbjct: 21  SVPSCNACKIFFRRLITRTMPIKKCFLGEY 50


>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 186 RRKNERGAHTNDVDIYNKSD 127
           RR+ E G+ T DVDIY+  D
Sbjct: 617 RREPEVGSDTGDVDIYDDGD 636


>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
           abnormal protein1 protein.
          Length = 1732

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 234 SIYSISDTIFCVRTH*RRKNERGAHTN-DVDIYNKSDSCQ 118
           S+Y   +T+  ++TH +R +   AH +  + +YN S   Q
Sbjct: 147 SLYKTDETVVSIQTHPKRTSFVSAHQDGSIILYNFSSRTQ 186


>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
           transport protein protein.
          Length = 1737

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 234 SIYSISDTIFCVRTH*RRKNERGAHTN-DVDIYNKSDSCQ 118
           S+Y   +T+  ++TH +R +   AH +  + +YN S   Q
Sbjct: 147 SLYKTDETVVSIQTHPKRTSFVSAHQDGSIILYNFSSRTQ 186


>Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical
           protein C49F5.4 protein.
          Length = 343

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 123 SCHSCYICQRRLCVR--PFRSCVVNE 194
           SC+SC I  RRL VR  P + C   E
Sbjct: 24  SCNSCKIFFRRLIVRTVPIKKCFRGE 49


>Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical
           protein B0393.9b protein.
          Length = 227

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 66  ASVRIV*FPKRIFMSISTDSCHSCYICQRRLC 161
           +S + V  PK+    IS D CH+C     R C
Sbjct: 21  SSCKTVICPKQPGKLISCDMCHTCLDSGSRFC 52


>U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical
           protein F59G1.8b protein.
          Length = 218

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 106 CQYQLTAVTLVIYVNVVCVCAPFVLASSMSTDTKYC 213
           C YQ   + L +YVN    C+P V +    T  KYC
Sbjct: 95  CYYQSAGIPLQLYVN----CSP-VDSDRFQTLNKYC 125


>U39667-2|AAQ91910.1|  426|Caenorhabditis elegans Xo lethal protein
           1, isoform c protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 87  FPKRIFMSIS---TDSCHSCYICQRRLCVRPFRSCVVNEYGH 203
           F   +F+++S      CH    C+R +   PF  C + +  H
Sbjct: 343 FSSLVFLTVSIVINAMCHKSIFCKRVISRLPFPHCQILKLSH 384


>U21317-2|AAA62531.3|  729|Caenorhabditis elegans Hypothetical
           protein B0495.5 protein.
          Length = 729

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 93  KRIFMSISTDSCHSCYICQR 152
           K IF+S+   +CH C++ ++
Sbjct: 55  KPIFLSVGYSTCHWCHVMEK 74


>L35129-1|AAA67047.1|  426|Caenorhabditis elegans xol-1 protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 87  FPKRIFMSIS---TDSCHSCYICQRRLCVRPFRSCVVNEYGH 203
           F   +F+++S      CH    C+R +   PF  C + +  H
Sbjct: 343 FSSLVFLTVSIVINAMCHKSIFCKRVISRLPFPHCQILKLSH 384


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 114 STDSCHSCYICQRRLCVR--PFRSCVVNE 194
           S  SC++C I  RRL  R  P + C + E
Sbjct: 21  SVPSCNACKIFFRRLITRTMPIKKCFLGE 49


>U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical
           protein F33G12.4 protein.
          Length = 453

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 177 NERGAHTNDVDIYNKSDSCQLILT*RCV*EII 82
           N  GAH  D+D+++K    Q +    C  E+I
Sbjct: 180 NPIGAHNRDLDVFSKLKQLQSLEMRSCSLELI 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,076,895
Number of Sequences: 27780
Number of extensions: 87047
Number of successful extensions: 211
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)