Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e21
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    24   2.4  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    23   5.6  
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual      23   5.6  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    23   5.6  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   7.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    22   9.7  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    22   9.7  

>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 167 DVTKSVLYDSLQ*KVQIYTCSNLSTVHWQ 81
           D  K +LYD +  K ++ T S+ S  H+Q
Sbjct: 28  DEAKQLLYDYVYIKEKLLTTSSNSLTHYQ 56


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 55  TTDVMSISNYAFCKFD 8
           T DVM + N  FCK D
Sbjct: 279 TPDVMDVINKCFCKND 294


>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 97

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 157 KVCYMIHYNRKYR 119
           KVC  +HYN +Y+
Sbjct: 58  KVCEYLHYNYRYK 70


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -1

Query: 110 CSNLSTVHWQLLFLMNTIDD 51
           CS + ++ W++  L+ T++D
Sbjct: 106 CSTIDSIKWRMHQLVKTVED 125


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 136 NESYSTLLVTSINVIHH 186
           +E Y+ L  T++NVI H
Sbjct: 721 DEDYNMLRTTAVNVIRH 737


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 99   EYGTLAAVVFNEYNRRLMSCLYRITRSVNLMA 4
            E  T  ++ FN+  R+L     R+T  V+L A
Sbjct: 1002 EPSTFVSLYFNDILRKLTDLDSRVTSKVSLKA 1033


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 20  ERVIRYRHDISRRLYSLKTTAANVPYSNYYMYKSVLSIV 136
           ++++   HD   RLY+LK    +VP+      ++ +SI+
Sbjct: 669 KKLLAIPHD-KLRLYALKVLKLSVPFLGLKWKQANMSII 706


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,936
Number of Sequences: 5004
Number of extensions: 12167
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)