Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e21
         (197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965     28   1.2  
11_08_0012 + 27623055-27623277,27623291-27625165,27625456-276255...    26   3.7  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    26   4.8  
10_02_0136 + 5719136-5719780,5719923-5720237                           25   6.4  
01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804...    25   8.5  

>11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965
          Length = 880

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 179 ITFIDVTKSVLYDSLQ*KVQIYTCSNLSTVHWQLLFLMNTIDD 51
           +T +DVTK+ L+  L     +  C  LST+   L ++   + D
Sbjct: 205 LTAVDVTKNNLHGDLNFLSTVSNCRKLSTLQMDLNYITGILPD 247


>11_08_0012 +
           27623055-27623277,27623291-27625165,27625456-27625567,
           27625586-27626130,27626305-27626591,27626770-27626805
          Length = 1025

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 179 ITFIDVTKSVLYDSLQ*KVQIYTCSNLSTVHWQLLFLMNTIDD 51
           +T +DVT++ L+  L     +  C  LST+   L ++   + D
Sbjct: 415 LTAVDVTENNLHGDLNFLSTVSNCRKLSTLQMDLNYITGILPD 457


>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 79   SCQCTVLKLLHV*ICTFY 132
            SCQC +L +L+V  C+FY
Sbjct: 1394 SCQCAILVILYV--CSFY 1409


>10_02_0136 + 5719136-5719780,5719923-5720237
          Length = 319

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 87  LAAVVFNEYNRRLMSCLY 34
           +  + FN+Y RRL +C+Y
Sbjct: 189 VVVIGFNKYRRRLFTCVY 206


>01_05_0491 -
           22680011-22680125,22680210-22680307,22680392-22680472,
           22680564-22680677,22680757-22680823,22680947-22681017,
           22681099-22681236,22681324-22681530,22681630-22681773,
           22681856-22682017,22682117-22682173,22682256-22682348,
           22682425-22682542,22682678-22682817,22683031-22683590,
           22683703-22683805
          Length = 755

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 46  HQSSIVFIKNNSCQCTVLKLLHV*ICTFYCNESYSTL 156
           H  S+  I +  C    ++ L+  I T YC++ Y TL
Sbjct: 645 HSKSLKEITDEYCPALSMQQLYR-ISTMYCDDKYGTL 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,193,766
Number of Sequences: 37544
Number of extensions: 57446
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)