Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e21
         (197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membr...    27   1.4  
U51999-8|AAA96090.2|  465|Caenorhabditis elegans Glutamate recep...    25   9.8  
AF318611-1|AAK01099.1|  436|Caenorhabditis elegans ionotropic gl...    25   9.8  

>U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membrane
           protein) homologprotein 1 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 20  ERVIRYRHDISRRLYSLKTTAANVPYSNYYMYKSVLSIVMNH 145
           ERV     D+ +RL ++ ++  N  Y  Y     +LSI M H
Sbjct: 16  ERVALSIDDLKKRLQTISSSNTNTLYYYYMSIVVILSIAMAH 57


>U51999-8|AAA96090.2|  465|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 7 protein.
          Length = 465

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 14  FTERVIRYRHDISRRLYSLK 73
           FT    RY++DI +R +SLK
Sbjct: 165 FTNNKERYQNDIEKRQFSLK 184


>AF318611-1|AAK01099.1|  436|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-7 protein.
          Length = 436

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 14  FTERVIRYRHDISRRLYSLK 73
           FT    RY++DI +R +SLK
Sbjct: 149 FTNNKERYQNDIEKRQFSLK 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,208,916
Number of Sequences: 27780
Number of extensions: 65544
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)