Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e21
         (197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.15 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   0.26 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   3.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   4.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    19   4.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   4.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   5.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   7.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      18   9.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.15
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 74  TTAANVPYSNYYMYKSVLSIV 136
           T +   PY +YY Y  VL++V
Sbjct: 630 TLSTKCPYPSYYSYIGVLTLV 650


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 136 NESYSTLLVTSINVIHH 186
           N+ Y+ L  T+INVI H
Sbjct: 85  NKEYNMLRTTAINVIRH 101


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 52 TDVMSISNYAFCKFD 8
          T ++ +  Y FC++D
Sbjct: 42 TTLLKLKRYLFCEYD 56


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 66  EYNRRLMSCLYRITRSVN 13
           E  RRLMS   R+++SVN
Sbjct: 786 EVMRRLMSEDKRLSKSVN 803


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +2

Query: 92  PYSNYYMY 115
           PY+NYY++
Sbjct: 141 PYNNYYIW 148


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 69  NEYNRRLMSCLYRITRSVNLM 7
           N Y+R  +SC  ++T+  N +
Sbjct: 112 NPYDRDSLSCWLQMTKHHNFI 132


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +2

Query: 92  PYSNYYMY 115
           PY+NYY++
Sbjct: 141 PYNNYYIW 148


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 107 YMYKSVLSIVMNH 145
           Y Y  ++S V+NH
Sbjct: 229 YYYSQIVSHVVNH 241


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 69  NEYNRRLMSCLYRITRSVN 13
           NE+   L  CLY  + ++N
Sbjct: 306 NEWLYILSGCLYYFSTTIN 324


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 7   HQIYRTRNSI 36
           H+++RT NS+
Sbjct: 408 HKVFRTLNSL 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,398
Number of Sequences: 438
Number of extensions: 922
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)